Variant report

Variant	rs4269978
Chromosome Location	chr12:42215966-42215967
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11181183	0.89[ASN][1000 genomes]
rs11181194	0.83[ASN][1000 genomes]
rs11181199	0.83[ASN][1000 genomes]
rs11181223	0.81[ASN][1000 genomes]
rs12099975	0.84[ASN][1000 genomes]
rs12227860	0.81[ASN][1000 genomes]
rs17090704	0.84[ASN][1000 genomes]
rs17090707	0.84[ASN][1000 genomes]
rs17090711	0.84[ASN][1000 genomes]
rs17090717	0.84[ASN][1000 genomes]
rs17090721	0.97[ASN][1000 genomes]
rs17090729	1.00[ASN][1000 genomes]
rs17090731	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17090732	1.00[ASN][1000 genomes]
rs17090736	0.97[ASN][1000 genomes]
rs17090757	0.89[ASN][1000 genomes]
rs57549882	0.84[ASN][1000 genomes]
rs58347456	0.99[ASN][1000 genomes]
rs59005597	0.84[ASN][1000 genomes]
rs59659255	1.00[ASN][1000 genomes]
rs59853785	0.84[ASN][1000 genomes]
rs60085326	0.84[ASN][1000 genomes]
rs61162180	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs61560666	0.84[ASN][1000 genomes]
rs73272813	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1047870	chr12:42158954-42254373	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
4	nsv1041975	chr12:42159517-42254373	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
5	nsv1037646	chr12:42160758-42254373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42208800-42231000	Weak transcription	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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