Variant report

Variant	rs61162180
Chromosome Location	chr12:42196891-42196892
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1105950	1.00[AMR][1000 genomes]
rs12099975	1.00[ASN][1000 genomes]
rs17090704	1.00[ASN][1000 genomes]
rs17090707	1.00[ASN][1000 genomes]
rs17090711	1.00[ASN][1000 genomes]
rs17090717	1.00[ASN][1000 genomes]
rs17090721	0.82[ASN][1000 genomes]
rs17090729	0.84[ASN][1000 genomes]
rs17090731	0.84[ASN][1000 genomes]
rs17090732	0.84[ASN][1000 genomes]
rs17090736	0.85[ASN][1000 genomes]
rs17129759	1.00[AMR][1000 genomes]
rs17129762	1.00[AMR][1000 genomes]
rs4269978	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs57228232	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs57549882	1.00[ASN][1000 genomes]
rs57633726	1.00[AMR][1000 genomes]
rs58347456	0.83[ASN][1000 genomes]
rs58841903	1.00[AMR][1000 genomes]
rs59005597	1.00[ASN][1000 genomes]
rs59659255	0.84[ASN][1000 genomes]
rs59853785	1.00[ASN][1000 genomes]
rs60085326	1.00[ASN][1000 genomes]
rs61560666	1.00[ASN][1000 genomes]
rs73272813	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1047870	chr12:42158954-42254373	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
4	nsv1041975	chr12:42159517-42254373	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
5	nsv1037646	chr12:42160758-42254373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
6	nsv1042971	chr12:42170661-42205843	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42195600-42197000	Enhancers	Brain Germinal Matrix	brain
2	chr12:42195800-42197000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr12:42196600-42197000	Enhancers	Fetal Brain Male	brain
4	chr12:42196600-42197000	Enhancers	Fetal Lung	lung
5	chr12:42196800-42200200	Weak transcription	Psoas Muscle	Psoas

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links