Variant report

Variant	rs4272876
Chromosome Location	chr13:30023198-30023199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1986785	0.86[CHD][hapmap];0.83[ASN][1000 genomes]
rs2388081	0.87[ASN][1000 genomes]
rs4435096	0.83[CEU][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4550318	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4644721	0.97[ASN][1000 genomes]
rs4769741	0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs7327557	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314956	0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs9508459	0.96[CHD][hapmap];0.88[JPT][hapmap];0.83[MEX][hapmap];0.97[ASN][1000 genomes]
rs9551683	0.93[CHD][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs9551684	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427927	chr13:29729315-30062054	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30014400-30031400	Weak transcription	Hela-S3	cervix
2	chr13:30015200-30054800	Weak transcription	Dnd41	blood
3	chr13:30016000-30028600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:30017800-30024000	Weak transcription	Aorta	Aorta
5	chr13:30018000-30027200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr13:30018600-30029000	Weak transcription	Esophagus	oesophagus
7	chr13:30019600-30024400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr13:30021200-30025200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr13:30022200-30023200	Enhancers	Fetal Muscle Trunk	muscle
10	chr13:30022400-30023400	Enhancers	Left Ventricle	heart
11	chr13:30022800-30024000	Weak transcription	Fetal Heart	heart
12	chr13:30022800-30024000	Weak transcription	Right Ventricle	heart
13	chr13:30022800-30028400	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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