Variant report

Variant	rs9551683
Chromosome Location	chr13:30026935-30026936
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1986785	0.82[ASW][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2388081	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4272876	0.93[CHD][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs4435096	0.91[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4550318	0.86[ASN][1000 genomes]
rs4644721	0.86[ASN][1000 genomes]
rs4769741	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7327557	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9314956	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9508459	0.90[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9551684	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427927	chr13:29729315-30062054	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30014400-30031400	Weak transcription	Hela-S3	cervix
2	chr13:30015200-30054800	Weak transcription	Dnd41	blood
3	chr13:30016000-30028600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:30018000-30027200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr13:30018600-30029000	Weak transcription	Esophagus	oesophagus
6	chr13:30022800-30028400	Weak transcription	Fetal Muscle Leg	muscle
7	chr13:30023200-30029200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr13:30024200-30027400	Weak transcription	Aorta	Aorta
9	chr13:30024400-30029000	Weak transcription	Left Ventricle	heart
10	chr13:30024600-30029000	Weak transcription	Right Ventricle	heart
11	chr13:30025200-30027800	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr13:30025800-30027000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr13:30026600-30027000	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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