Variant report

Variant	rs4274405
Chromosome Location	chr15:73313691-73313692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73308586..73310099-chr15:73313324..73315028,2	MCF-7	breast:
2	chr15:73312385..73315201-chr15:73317678..73319945,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12908311	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12910026	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12911882	0.85[ASN][1000 genomes]
rs28571021	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4296227	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4436752	0.80[AFR][1000 genomes]
rs4445871	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4777580	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4777581	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7163543	0.82[MKK][hapmap];0.80[AFR][1000 genomes]
rs7173710	0.85[GIH][hapmap];0.86[MKK][hapmap]
rs7181555	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7496513	0.83[AFR][1000 genomes]
rs8041358	0.83[ASN][1000 genomes]
rs9806341	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73312400-73315200	Enhancers	Brain Substantia Nigra	brain
2	chr15:73312600-73313800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr15:73312600-73315800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr15:73312800-73314400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr15:73312800-73315000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr15:73312800-73316800	Enhancers	Fetal Brain Male	brain
7	chr15:73313000-73314000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:73313000-73315000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr15:73313000-73315000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr15:73313000-73315000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr15:73313000-73315200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:73313000-73316400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:73313200-73313800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr15:73313200-73313800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr15:73313200-73314000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr15:73313200-73314000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr15:73313200-73314800	Enhancers	H9 Cell Line	embryonic stem cell
18	chr15:73313200-73315600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:73313400-73313800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr15:73313400-73314000	Flanking Active TSS	Brain Hippocampus Middle	brain
21	chr15:73313400-73314800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:73313400-73315200	Enhancers	Brain Germinal Matrix	brain
23	chr15:73313400-73315600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:73313400-73316000	Enhancers	Fetal Stomach	stomach
25	chr15:73313600-73313800	Enhancers	Brain Angular Gyrus	brain
26	chr15:73313600-73313800	Flanking Active TSS	Brain Anterior Caudate	brain
27	chr15:73313600-73314000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr15:73313600-73314000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:73313600-73314000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr15:73313600-73314000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:73313600-73314000	Flanking Active TSS	Brain Cingulate Gyrus	brain
32	chr15:73313600-73314000	Flanking Active TSS	Fetal Brain Female	brain
33	chr15:73313600-73314000	Bivalent/Poised TSS	Hela-S3	cervix
34	chr15:73313600-73314800	Enhancers	Fetal Lung	lung
35	chr15:73313600-73315000	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr15:73313600-73315200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr15:73313600-73315600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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