Variant report

Variant	rs9806341
Chromosome Location	chr15:73300895-73300896
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11852401	0.86[MEX][hapmap]
rs12908311	0.88[EUR][1000 genomes]
rs12910026	0.84[EUR][1000 genomes]
rs12911882	0.85[ASN][1000 genomes]
rs1449269	0.95[MEX][hapmap]
rs1449270	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2053857	0.82[AMR][1000 genomes]
rs28571021	0.88[EUR][1000 genomes]
rs34173815	0.82[AMR][1000 genomes]
rs4238456	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4238457	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4238458	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4260029	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4274405	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4296227	0.88[EUR][1000 genomes]
rs4328412	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4401026	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4430712	0.83[AMR][1000 genomes]
rs4445871	0.88[EUR][1000 genomes]
rs4511500	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4563021	0.80[EUR][1000 genomes]
rs4575500	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4777569	0.82[AMR][1000 genomes]
rs4777580	0.88[EUR][1000 genomes]
rs4777581	0.88[EUR][1000 genomes]
rs6495035	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6495036	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6495042	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7165834	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7181555	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7496513	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8031589	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8041358	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv94939	chr15:73295725-73301168	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9806341	CYP11A1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73292800-73301400	Weak transcription	Fetal Stomach	stomach
2	chr15:73298400-73303200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:73299800-73302400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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