Variant report

Variant	rs6495042
Chromosome Location	chr15:73282726-73282727
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73280099..73282772-chr15:73284444..73286998,2	K562	blood:
2	chr15:73281450..73284379-chr15:73286906..73289508,2	MCF-7	breast:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1080331	0.81[ASN][1000 genomes]
rs1080332	0.81[ASN][1000 genomes]
rs11072398	0.82[ASN][1000 genomes]
rs11632783	0.85[ASN][1000 genomes]
rs11639220	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12438940	0.81[ASN][1000 genomes]
rs12440392	0.84[ASN][1000 genomes]
rs12442084	0.82[ASN][1000 genomes]
rs12592939	0.85[ASN][1000 genomes]
rs12901593	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1449267	0.81[ASN][1000 genomes]
rs1449269	0.82[JPT][hapmap]
rs1449270	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1466111	0.82[ASN][1000 genomes]
rs1823338	0.81[ASN][1000 genomes]
rs1839271	0.85[ASN][1000 genomes]
rs1900901	0.94[ASN][1000 genomes]
rs1979106	0.84[ASN][1000 genomes]
rs2053857	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2122217	0.82[ASN][1000 genomes]
rs2415209	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs28424084	0.87[ASN][1000 genomes]
rs28451690	0.87[ASN][1000 genomes]
rs28513521	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28615518	0.86[ASN][1000 genomes]
rs28647826	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28666516	0.85[ASN][1000 genomes]
rs28686814	0.87[ASN][1000 genomes]
rs34173815	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4076146	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4238456	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4238457	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4238458	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4260029	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4260030	0.87[ASN][1000 genomes]
rs4286085	0.86[ASN][1000 genomes]
rs4297657	0.87[ASN][1000 genomes]
rs4328412	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4360901	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4366688	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4374145	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4383117	0.88[ASN][1000 genomes]
rs4401026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4430712	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4511500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4522396	0.87[ASN][1000 genomes]
rs4563021	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4572358	0.87[ASN][1000 genomes]
rs4575500	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4597288	0.87[ASN][1000 genomes]
rs4776621	0.85[ASN][1000 genomes]
rs4777569	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4777577	0.91[JPT][hapmap]
rs60053960	0.82[ASN][1000 genomes]
rs60557800	0.82[ASN][1000 genomes]
rs6495033	0.81[ASN][1000 genomes]
rs6495035	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6495036	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6495037	0.86[ASN][1000 genomes]
rs6495038	0.86[ASN][1000 genomes]
rs6495039	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6495040	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7164304	0.83[ASN][1000 genomes]
rs7165104	0.85[ASN][1000 genomes]
rs7165325	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7165504	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7165834	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7166470	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7178831	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7180332	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7183175	0.84[ASN][1000 genomes]
rs7496513	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8025463	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs8025665	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs8031589	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8033793	0.87[ASN][1000 genomes]
rs8033860	0.87[ASN][1000 genomes]
rs8033954	0.87[ASN][1000 genomes]
rs8034120	0.87[ASN][1000 genomes]
rs8036013	0.83[ASN][1000 genomes]
rs921260	0.85[ASN][1000 genomes]
rs921261	0.85[ASN][1000 genomes]
rs9806341	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73278000-73286200	Weak transcription	Fetal Brain Male	brain
2	chr15:73282000-73283400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links