Variant report

Variant	rs4366688
Chromosome Location	chr15:73272784-73272785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs1080331	0.92[ASN][1000 genomes]
rs1080332	0.92[ASN][1000 genomes]
rs11072398	0.93[ASN][1000 genomes]
rs11072401	0.83[ASN][1000 genomes]
rs11632783	0.96[ASN][1000 genomes]
rs11639220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12438940	0.92[ASN][1000 genomes]
rs12440392	0.95[ASN][1000 genomes]
rs12441946	0.86[JPT][hapmap]
rs12442084	0.93[ASN][1000 genomes]
rs12443302	0.85[ASN][1000 genomes]
rs12592939	0.96[ASN][1000 genomes]
rs12594272	0.90[ASN][1000 genomes]
rs12901593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1375496	0.88[ASN][1000 genomes]
rs1449267	0.92[ASN][1000 genomes]
rs1449269	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs1449270	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1466111	0.93[ASN][1000 genomes]
rs1823338	0.92[ASN][1000 genomes]
rs1839270	0.86[JPT][hapmap]
rs1839271	0.96[ASN][1000 genomes]
rs1900901	0.87[ASN][1000 genomes]
rs1979106	0.95[ASN][1000 genomes]
rs2053857	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2122217	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2415209	0.83[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2415212	0.81[ASN][1000 genomes]
rs2415213	0.81[ASN][1000 genomes]
rs28424084	0.99[ASN][1000 genomes]
rs28451690	0.99[ASN][1000 genomes]
rs28505267	0.80[ASN][1000 genomes]
rs28513521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28615518	0.97[ASN][1000 genomes]
rs28647826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28666516	0.96[ASN][1000 genomes]
rs28686814	0.99[ASN][1000 genomes]
rs34173815	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4076146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4238456	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4238457	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4238458	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4260029	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4260030	0.99[ASN][1000 genomes]
rs4286085	0.97[ASN][1000 genomes]
rs4297657	0.99[ASN][1000 genomes]
rs4328412	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4360901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4374145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4383117	0.98[ASN][1000 genomes]
rs4401026	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4430712	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4468585	0.82[ASN][1000 genomes]
rs4511500	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4522396	0.99[ASN][1000 genomes]
rs4531709	0.85[ASN][1000 genomes]
rs4563021	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4572358	0.99[ASN][1000 genomes]
rs4575500	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4597288	0.99[ASN][1000 genomes]
rs4776621	0.96[ASN][1000 genomes]
rs4777569	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4777577	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4777578	0.85[ASN][1000 genomes]
rs55768020	0.85[ASN][1000 genomes]
rs60053960	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60557800	0.93[ASN][1000 genomes]
rs62015256	0.85[ASN][1000 genomes]
rs6495033	0.91[ASN][1000 genomes]
rs6495035	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6495036	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6495037	0.97[ASN][1000 genomes]
rs6495038	0.97[ASN][1000 genomes]
rs6495039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495042	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7164304	0.94[ASN][1000 genomes]
rs7164592	0.82[ASN][1000 genomes]
rs7165104	0.96[ASN][1000 genomes]
rs7165325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165834	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7166470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7180332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7183175	0.95[ASN][1000 genomes]
rs7496513	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8025463	0.83[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs8025665	0.82[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs8031589	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8033793	0.99[ASN][1000 genomes]
rs8033860	0.99[ASN][1000 genomes]
rs8033954	0.99[ASN][1000 genomes]
rs8034120	0.99[ASN][1000 genomes]
rs8036013	0.94[ASN][1000 genomes]
rs921260	0.96[ASN][1000 genomes]
rs921261	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4366688	NEO1	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73270200-73273200	Enhancers	Fetal Brain Male	brain
2	chr15:73270400-73274200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:73271600-73272800	Enhancers	Fetal Brain Female	brain
4	chr15:73272000-73272800	Enhancers	Fetal Lung	lung
5	chr15:73272200-73272800	Enhancers	Rectal Smooth Muscle	rectum
6	chr15:73272600-73272800	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr15:73272600-73274800	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links