Variant report

Variant	rs2415213
Chromosome Location	chr15:73227930-73227931
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1080331	0.86[ASN][1000 genomes]
rs1080332	0.86[ASN][1000 genomes]
rs11072398	0.85[ASN][1000 genomes]
rs11631402	0.92[ASN][1000 genomes]
rs11632783	0.82[ASN][1000 genomes]
rs11636130	0.96[ASN][1000 genomes]
rs11638999	0.82[ASN][1000 genomes]
rs11854040	0.96[ASN][1000 genomes]
rs11857236	0.93[ASN][1000 genomes]
rs12148518	0.96[ASN][1000 genomes]
rs12438940	0.86[ASN][1000 genomes]
rs12440392	0.81[ASN][1000 genomes]
rs12441946	0.81[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs12442084	0.86[ASN][1000 genomes]
rs12592939	0.82[ASN][1000 genomes]
rs12594272	0.83[ASN][1000 genomes]
rs12901593	0.81[ASN][1000 genomes]
rs1375496	0.81[ASN][1000 genomes]
rs1449266	0.85[ASN][1000 genomes]
rs1449267	0.86[ASN][1000 genomes]
rs1449269	0.80[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs1466111	0.86[ASN][1000 genomes]
rs1823338	0.86[ASN][1000 genomes]
rs1839270	0.81[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs1839271	0.82[ASN][1000 genomes]
rs1868473	0.87[ASN][1000 genomes]
rs1979106	0.85[ASN][1000 genomes]
rs2100202	0.91[ASN][1000 genomes]
rs2100203	0.92[ASN][1000 genomes]
rs2122217	0.85[ASN][1000 genomes]
rs2197893	0.96[ASN][1000 genomes]
rs2197894	0.90[ASN][1000 genomes]
rs2415209	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs2415212	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28424084	0.82[ASN][1000 genomes]
rs28451690	0.82[ASN][1000 genomes]
rs28505267	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28548649	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28615518	0.81[ASN][1000 genomes]
rs28647497	0.95[ASN][1000 genomes]
rs28653293	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28666516	0.82[ASN][1000 genomes]
rs28686814	0.82[ASN][1000 genomes]
rs4260030	0.82[ASN][1000 genomes]
rs4286085	0.81[ASN][1000 genomes]
rs4297657	0.82[ASN][1000 genomes]
rs4315307	0.85[ASN][1000 genomes]
rs4360901	0.81[ASN][1000 genomes]
rs4366688	0.81[ASN][1000 genomes]
rs4374145	0.81[ASN][1000 genomes]
rs4383117	0.81[ASN][1000 genomes]
rs4522396	0.82[ASN][1000 genomes]
rs4572358	0.82[ASN][1000 genomes]
rs4597288	0.82[ASN][1000 genomes]
rs4776621	0.82[ASN][1000 genomes]
rs4777577	0.86[JPT][hapmap]
rs60053960	0.85[ASN][1000 genomes]
rs60557800	0.86[ASN][1000 genomes]
rs62016086	0.96[ASN][1000 genomes]
rs6495033	0.84[ASN][1000 genomes]
rs6495037	0.81[ASN][1000 genomes]
rs6495038	0.81[ASN][1000 genomes]
rs6495039	0.81[ASN][1000 genomes]
rs6495040	0.81[ASN][1000 genomes]
rs71397270	0.91[ASN][1000 genomes]
rs7164304	0.84[ASN][1000 genomes]
rs7165104	0.82[ASN][1000 genomes]
rs7165325	0.81[ASN][1000 genomes]
rs7165504	0.81[ASN][1000 genomes]
rs7166470	0.81[ASN][1000 genomes]
rs7171864	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7183175	0.81[ASN][1000 genomes]
rs8025463	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs8025665	0.81[JPT][hapmap]
rs8028981	0.93[ASN][1000 genomes]
rs8033793	0.82[ASN][1000 genomes]
rs8033860	0.82[ASN][1000 genomes]
rs8033954	0.82[ASN][1000 genomes]
rs8034120	0.82[ASN][1000 genomes]
rs8036013	0.85[ASN][1000 genomes]
rs921260	0.82[ASN][1000 genomes]
rs921261	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73225000-73230800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:73225800-73228800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr15:73226200-73230800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:73226600-73230000	Weak transcription	Aorta	Aorta
5	chr15:73227600-73228400	Enhancers	Fetal Stomach	stomach
6	chr15:73227800-73228000	Enhancers	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links