Variant report

Variant	rs1449266
Chromosome Location	chr15:73198334-73198335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10851861	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11072395	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11631402	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11632408	0.93[EUR][1000 genomes]
rs11636130	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11638999	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11852401	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11854040	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11857236	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12148518	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12441946	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12899945	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1449269	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1839270	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1868473	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2100202	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2100203	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2197893	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2197894	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2415209	0.90[JPT][hapmap]
rs2415212	0.85[ASN][1000 genomes]
rs2415213	0.85[ASN][1000 genomes]
rs28505267	0.85[ASN][1000 genomes]
rs28548649	0.88[ASN][1000 genomes]
rs28647497	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28653293	0.88[ASN][1000 genomes]
rs4315307	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4776618	0.92[EUR][1000 genomes]
rs4777566	0.89[EUR][1000 genomes]
rs4777577	0.86[JPT][hapmap]
rs62016086	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71397270	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7171864	0.88[ASN][1000 genomes]
rs8025463	0.86[JPT][hapmap]
rs8025665	0.85[JPT][hapmap]
rs8028981	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8041735	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73195400-73200000	Weak transcription	Fetal Lung	lung
2	chr15:73195600-73199800	Weak transcription	Fetal Intestine Small	intestine
3	chr15:73195600-73200000	Weak transcription	Fetal Muscle Leg	muscle
4	chr15:73195600-73200000	Weak transcription	Ovary	ovary
5	chr15:73197400-73200000	Weak transcription	Fetal Intestine Large	intestine
6	chr15:73198000-73199800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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