Variant report

Variant	rs28653293
Chromosome Location	chr15:73228574-73228575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73228278..73230210-chr15:73344108..73345892,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067141	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1080331	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1080332	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10851861	0.82[ASN][1000 genomes]
rs11072395	0.81[ASN][1000 genomes]
rs11072398	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11631402	0.88[ASN][1000 genomes]
rs11632783	0.81[EUR][1000 genomes]
rs11636130	0.92[ASN][1000 genomes]
rs11638999	0.86[ASN][1000 genomes]
rs11854040	0.92[ASN][1000 genomes]
rs11857236	0.95[ASN][1000 genomes]
rs12148518	0.92[ASN][1000 genomes]
rs12438940	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12441946	0.87[ASN][1000 genomes]
rs12442084	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12443302	0.82[AMR][1000 genomes]
rs12592939	0.81[EUR][1000 genomes]
rs12594272	0.81[AMR][1000 genomes]
rs12899945	0.81[ASN][1000 genomes]
rs1375496	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1449266	0.88[ASN][1000 genomes]
rs1449267	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1449269	0.89[ASN][1000 genomes]
rs1466111	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1823338	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1839270	0.89[ASN][1000 genomes]
rs1839271	0.81[EUR][1000 genomes]
rs1868473	0.90[ASN][1000 genomes]
rs1979106	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2100202	0.87[ASN][1000 genomes]
rs2100203	0.89[ASN][1000 genomes]
rs2122217	0.82[ASN][1000 genomes]
rs2197893	0.92[ASN][1000 genomes]
rs2197894	0.93[ASN][1000 genomes]
rs2415209	0.81[EUR][1000 genomes]
rs2415212	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2415213	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28424084	0.82[EUR][1000 genomes]
rs28451690	0.82[EUR][1000 genomes]
rs28505267	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28548649	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28615518	0.82[EUR][1000 genomes]
rs28647497	0.91[ASN][1000 genomes]
rs28666516	0.81[EUR][1000 genomes]
rs28686814	0.82[EUR][1000 genomes]
rs4260030	0.82[EUR][1000 genomes]
rs4286085	0.80[EUR][1000 genomes]
rs4297657	0.82[EUR][1000 genomes]
rs4315307	0.88[ASN][1000 genomes]
rs4383117	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4522396	0.81[EUR][1000 genomes]
rs4531709	0.82[AMR][1000 genomes]
rs4572358	0.82[EUR][1000 genomes]
rs4597288	0.81[EUR][1000 genomes]
rs4776621	0.81[EUR][1000 genomes]
rs55768020	0.82[AMR][1000 genomes]
rs60053960	0.82[ASN][1000 genomes]
rs60557800	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62015256	0.82[AMR][1000 genomes]
rs62016086	0.92[ASN][1000 genomes]
rs6495033	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6495037	0.81[EUR][1000 genomes]
rs6495038	0.81[EUR][1000 genomes]
rs71397270	0.94[ASN][1000 genomes]
rs7164304	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7164592	0.82[AMR][1000 genomes]
rs7165104	0.81[EUR][1000 genomes]
rs7171864	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7183175	0.80[EUR][1000 genomes]
rs8025463	0.81[EUR][1000 genomes]
rs8028981	0.95[ASN][1000 genomes]
rs8033793	0.82[EUR][1000 genomes]
rs8033860	0.82[EUR][1000 genomes]
rs8033954	0.82[EUR][1000 genomes]
rs8034120	0.82[EUR][1000 genomes]
rs8036013	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs921260	0.81[EUR][1000 genomes]
rs921261	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73225000-73230800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:73225800-73228800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr15:73226200-73230800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:73226600-73230000	Weak transcription	Aorta	Aorta
5	chr15:73228000-73229600	Weak transcription	Psoas Muscle	Psoas
6	chr15:73228400-73229800	Weak transcription	Fetal Stomach	stomach

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