Variant report

Variant	rs8028981
Chromosome Location	chr15:73214388-73214389
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10851861	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11072395	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11631402	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11632408	0.89[EUR][1000 genomes]
rs11636130	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11638999	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11852401	0.92[EUR][1000 genomes]
rs11854040	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11857236	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12148518	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12441946	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12899945	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1449266	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1449269	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1839270	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1868473	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2053857	0.82[AMR][1000 genomes]
rs2100202	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2100203	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2122217	0.80[ASN][1000 genomes]
rs2197893	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2197894	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2415212	0.93[ASN][1000 genomes]
rs2415213	0.93[ASN][1000 genomes]
rs28505267	0.92[ASN][1000 genomes]
rs28548649	0.96[ASN][1000 genomes]
rs28647497	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28653293	0.95[ASN][1000 genomes]
rs34173815	0.82[AMR][1000 genomes]
rs4238456	0.82[AMR][1000 genomes]
rs4238457	0.82[AMR][1000 genomes]
rs4238458	0.80[AMR][1000 genomes]
rs4260029	0.80[AMR][1000 genomes]
rs4315307	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4328412	0.82[AMR][1000 genomes]
rs4430712	0.80[AMR][1000 genomes]
rs4563021	0.82[AMR][1000 genomes]
rs4575500	0.80[AMR][1000 genomes]
rs4776618	0.88[EUR][1000 genomes]
rs4777566	0.92[EUR][1000 genomes]
rs4777569	0.82[AMR][1000 genomes]
rs60053960	0.80[ASN][1000 genomes]
rs62016086	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6495035	0.82[AMR][1000 genomes]
rs71397270	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7171864	0.96[ASN][1000 genomes]
rs8031589	0.82[AMR][1000 genomes]
rs8041735	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73213800-73217800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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