Variant report

Variant	rs1868473
Chromosome Location	chr15:73202315-73202316
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10851861	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11072395	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11631402	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11632408	0.91[EUR][1000 genomes]
rs11636130	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11638999	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11852401	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11854040	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11857236	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12148518	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12441946	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12899945	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1449266	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1449269	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1839270	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2053857	0.80[AMR][1000 genomes]
rs2100202	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2100203	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2197893	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2197894	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2415209	0.91[JPT][hapmap]
rs2415212	0.87[ASN][1000 genomes]
rs2415213	0.87[ASN][1000 genomes]
rs28505267	0.86[ASN][1000 genomes]
rs28548649	0.90[ASN][1000 genomes]
rs28647497	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28653293	0.90[ASN][1000 genomes]
rs34173815	0.80[AMR][1000 genomes]
rs4238456	0.80[AMR][1000 genomes]
rs4238457	0.80[AMR][1000 genomes]
rs4315307	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4328412	0.80[AMR][1000 genomes]
rs4563021	0.81[AMR][1000 genomes]
rs4776618	0.91[EUR][1000 genomes]
rs4777566	0.90[EUR][1000 genomes]
rs4777569	0.80[AMR][1000 genomes]
rs4777577	0.91[JPT][hapmap]
rs62016086	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6495035	0.80[AMR][1000 genomes]
rs71397270	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7171864	0.90[ASN][1000 genomes]
rs8025463	0.91[JPT][hapmap]
rs8025665	0.87[JPT][hapmap]
rs8028981	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8031589	0.80[AMR][1000 genomes]
rs8041735	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73200400-73204000	Weak transcription	Fetal Intestine Large	intestine
2	chr15:73200400-73204000	Weak transcription	Fetal Intestine Small	intestine
3	chr15:73200400-73204200	Weak transcription	Fetal Muscle Leg	muscle
4	chr15:73201600-73204600	Weak transcription	Fetal Stomach	stomach

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