Variant report

Variant	rs11631402
Chromosome Location	chr15:73204661-73204662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10851861	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11072395	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11632408	0.90[EUR][1000 genomes]
rs11636130	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11638999	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11852401	0.93[EUR][1000 genomes]
rs11854040	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11857236	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12148518	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12441946	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12899945	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1449266	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1449269	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1839270	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1868473	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2100202	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2100203	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2197893	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2197894	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2415212	0.92[ASN][1000 genomes]
rs2415213	0.92[ASN][1000 genomes]
rs28505267	0.91[ASN][1000 genomes]
rs28548649	0.89[ASN][1000 genomes]
rs28647497	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28653293	0.88[ASN][1000 genomes]
rs4315307	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4776618	0.89[EUR][1000 genomes]
rs4777566	0.92[EUR][1000 genomes]
rs62016086	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71397270	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7171864	0.89[ASN][1000 genomes]
rs8028981	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8041735	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73204000-73204800	Enhancers	Fetal Intestine Large	intestine
2	chr15:73204000-73204800	Enhancers	Fetal Intestine Small	intestine
3	chr15:73204000-73204800	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr15:73204000-73205600	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr15:73204200-73205600	Enhancers	Fetal Muscle Leg	muscle
6	chr15:73204600-73205000	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links