Variant report

Variant	rs71397270
Chromosome Location	chr15:73207773-73207774
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10851861	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11072395	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11631402	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11632408	0.81[EUR][1000 genomes]
rs11636130	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11638999	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11852401	0.83[EUR][1000 genomes]
rs11854040	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11857236	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12148518	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12441946	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12899945	0.82[ASN][1000 genomes]
rs1449266	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1449269	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1839270	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1868473	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2100202	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2100203	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2197893	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2197894	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2415212	0.91[ASN][1000 genomes]
rs2415213	0.91[ASN][1000 genomes]
rs28505267	0.90[ASN][1000 genomes]
rs28548649	0.94[ASN][1000 genomes]
rs28647497	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28653293	0.94[ASN][1000 genomes]
rs4315307	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4777566	0.82[EUR][1000 genomes]
rs62016086	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7171864	0.94[ASN][1000 genomes]
rs8028981	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73204800-73209200	Weak transcription	Fetal Intestine Small	intestine
2	chr15:73204800-73212200	Weak transcription	Rectal Mucosa Donor 31	rectum

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