Variant report

Variant	rs4777577
Chromosome Location	chr15:73264062-73264063
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73261869..73264413-chr15:73266352..73269682,3	MCF-7	breast:
2	chr15:73073604..73076193-chr15:73263164..73264719,2	K562	blood:
3	chr15:73262265..73265047-chr15:73342979..73345241,3	MCF-7	breast:
4	chr15:73258951..73261600-chr15:73262517..73265524,3	MCF-7	breast:
5	chr15:73262584..73265850-chr15:73343191..73346081,4	MCF-7	breast:
6	chr15:73234817..73236569-chr15:73261756..73264144,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067141	Chromatin interaction
ENSG00000159322	Chromatin interaction
ENSG00000260898	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1080331	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1080332	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11072398	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11072401	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11632783	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11639220	0.86[ASN][1000 genomes]
rs12438940	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12440392	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12441946	0.86[JPT][hapmap]
rs12442084	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12443302	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12592939	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12594272	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12901593	0.85[ASN][1000 genomes]
rs1375496	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1449267	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1449269	0.86[JPT][hapmap]
rs1466111	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1823338	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1839270	0.86[JPT][hapmap]
rs1839271	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1900901	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1979106	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2122217	0.80[ASN][1000 genomes]
rs2415209	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28424084	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28451690	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28513521	0.86[ASN][1000 genomes]
rs28615518	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28647826	0.86[ASN][1000 genomes]
rs28666516	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28686814	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4076146	0.86[ASN][1000 genomes]
rs4260030	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4286085	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4297657	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4360901	0.85[ASN][1000 genomes]
rs4366688	0.85[ASN][1000 genomes]
rs4374145	0.85[ASN][1000 genomes]
rs4383117	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4468585	0.82[EUR][1000 genomes]
rs4522396	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4531709	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4572358	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4597288	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4776621	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4777578	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55768020	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60053960	0.80[ASN][1000 genomes]
rs60557800	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62015256	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495033	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6495037	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6495038	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6495039	0.85[ASN][1000 genomes]
rs6495040	0.85[ASN][1000 genomes]
rs7164304	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7164592	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7165104	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7165325	0.85[ASN][1000 genomes]
rs7165504	0.85[ASN][1000 genomes]
rs7166470	0.85[ASN][1000 genomes]
rs7178831	0.86[ASN][1000 genomes]
rs7180332	0.86[ASN][1000 genomes]
rs7183175	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8025463	0.91[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8025665	0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8033793	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8033860	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8033954	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8034120	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8036013	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs921260	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs921261	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73258000-73264400	Enhancers	Fetal Brain Male	brain
2	chr15:73262200-73265000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:73262800-73265000	Enhancers	Fetal Stomach	stomach
4	chr15:73263000-73264600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr15:73263000-73265000	Enhancers	Fetal Muscle Leg	muscle
6	chr15:73263200-73264200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:73263200-73264200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:73263200-73264800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:73263200-73264800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr15:73263400-73264400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr15:73263400-73264400	Flanking Active TSS	NHLF	lung
12	chr15:73263400-73264600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:73263400-73264600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:73263400-73264600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr15:73263400-73264600	Enhancers	Fetal Intestine Small	intestine
16	chr15:73263400-73264600	Flanking Active TSS	Osteobl	bone
17	chr15:73263400-73264800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr15:73263600-73264200	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr15:73263600-73264200	Flanking Active TSS	Colon Smooth Muscle	Colon
20	chr15:73263600-73264200	Flanking Active TSS	Ovary	ovary
21	chr15:73263600-73264200	Bivalent/Poised TSS	Hela-S3	cervix
22	chr15:73263600-73264200	Enhancers	NH-A	brain
23	chr15:73263600-73264400	Active TSS	Aorta	Aorta
24	chr15:73263600-73264400	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr15:73263600-73265000	Enhancers	Brain Substantia Nigra	brain
26	chr15:73263800-73264200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:73263800-73264200	Flanking Active TSS	Brain Angular Gyrus	brain
28	chr15:73263800-73264200	Active TSS	Brain Hippocampus Middle	brain
29	chr15:73263800-73264200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr15:73263800-73264200	Flanking Active TSS	Fetal Kidney	kidney
31	chr15:73263800-73264200	Flanking Active TSS	Fetal Lung	lung
32	chr15:73263800-73264200	Active TSS	Psoas Muscle	Psoas
33	chr15:73263800-73264200	Active TSS	Rectal Mucosa Donor 29	rectum
34	chr15:73263800-73264200	Bivalent/Poised TSS	A549	lung
35	chr15:73263800-73264400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
36	chr15:73263800-73264400	Active TSS	Stomach Smooth Muscle	stomach
37	chr15:73263800-73264600	Active TSS	Brain Anterior Caudate	brain
38	chr15:73263800-73264600	Enhancers	Brain Germinal Matrix	brain
39	chr15:73263800-73264600	Active TSS	Right Atrium	heart
40	chr15:73263800-73264800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr15:73264000-73264200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr15:73264000-73264200	Flanking Active TSS	Pancreas	Pancrea
43	chr15:73264000-73264400	Active TSS	Fetal Brain Female	brain
44	chr15:73264000-73264400	Weak transcription	Fetal Muscle Trunk	muscle
45	chr15:73264000-73264400	Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr15:73264000-73264400	Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr15:73264000-73264600	Active TSS	Brain Cingulate Gyrus	brain
48	chr15:73264000-73264600	Weak transcription	Fetal Intestine Large	intestine
49	chr15:73264000-73264800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr15:73264000-73267600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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