Variant report

Variant	rs1979106
Chromosome Location	chr15:73254639-73254640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73253962..73256097-chr15:73259190..73261337,2	MCF-7	breast:

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs1080331	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1080332	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11072398	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11072401	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11632783	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11636130	0.81[ASN][1000 genomes]
rs11639220	0.94[ASN][1000 genomes]
rs11854040	0.81[ASN][1000 genomes]
rs12148518	0.81[ASN][1000 genomes]
rs12438940	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12440392	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12441946	0.82[JPT][hapmap]
rs12442084	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12443302	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12592939	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12594272	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12901593	0.95[ASN][1000 genomes]
rs1375496	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1449267	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1449269	0.86[JPT][hapmap]
rs1449270	0.87[ASN][1000 genomes]
rs1466111	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1823338	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1839270	0.82[JPT][hapmap]
rs1839271	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1900901	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2053857	0.84[ASN][1000 genomes]
rs2122217	0.95[ASN][1000 genomes]
rs2197893	0.81[ASN][1000 genomes]
rs2415209	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2415212	0.85[ASN][1000 genomes]
rs2415213	0.85[ASN][1000 genomes]
rs28424084	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28451690	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28505267	0.83[ASN][1000 genomes]
rs28513521	0.93[ASN][1000 genomes]
rs28548649	0.82[ASN][1000 genomes]
rs28615518	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28647497	0.81[ASN][1000 genomes]
rs28647826	0.94[ASN][1000 genomes]
rs28653293	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28666516	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28686814	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34173815	0.84[ASN][1000 genomes]
rs4076146	0.94[ASN][1000 genomes]
rs4238456	0.89[ASN][1000 genomes]
rs4238457	0.88[ASN][1000 genomes]
rs4238458	0.89[ASN][1000 genomes]
rs4260029	0.89[ASN][1000 genomes]
rs4260030	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4286085	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4297657	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4328412	0.89[ASN][1000 genomes]
rs4360901	0.95[ASN][1000 genomes]
rs4366688	0.95[ASN][1000 genomes]
rs4374145	0.95[ASN][1000 genomes]
rs4383117	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4401026	0.85[ASN][1000 genomes]
rs4430712	0.84[ASN][1000 genomes]
rs4468585	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4511500	0.86[ASN][1000 genomes]
rs4522396	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4531709	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4563021	0.89[ASN][1000 genomes]
rs4572358	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4575500	0.89[ASN][1000 genomes]
rs4597288	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4776621	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4777569	0.84[ASN][1000 genomes]
rs4777577	0.91[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4777578	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55768020	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60053960	0.95[ASN][1000 genomes]
rs60557800	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62015256	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62016086	0.81[ASN][1000 genomes]
rs6495033	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6495035	0.89[ASN][1000 genomes]
rs6495036	0.85[ASN][1000 genomes]
rs6495037	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6495038	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6495039	0.95[ASN][1000 genomes]
rs6495040	0.95[ASN][1000 genomes]
rs6495042	0.84[ASN][1000 genomes]
rs7164304	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7164592	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7165104	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7165325	0.95[ASN][1000 genomes]
rs7165504	0.95[ASN][1000 genomes]
rs7165834	0.86[ASN][1000 genomes]
rs7166470	0.95[ASN][1000 genomes]
rs7171864	0.83[ASN][1000 genomes]
rs7178831	0.94[ASN][1000 genomes]
rs7180332	0.94[ASN][1000 genomes]
rs7183175	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7496513	0.83[ASN][1000 genomes]
rs8025463	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8025665	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8031589	0.89[ASN][1000 genomes]
rs8033793	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8033860	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8033954	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8034120	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8036013	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs921260	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs921261	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv521475	chr15:73250485-73263405	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73253400-73255000	Enhancers	Colonic Mucosa	Colon
2	chr15:73253400-73258200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr15:73253400-73261400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:73253600-73254800	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr15:73253600-73255000	Enhancers	Fetal Muscle Leg	muscle
6	chr15:73253600-73255200	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr15:73253800-73254800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:73253800-73255200	Enhancers	Primary T cells fromperipheralblood	blood
9	chr15:73253800-73255200	Enhancers	Fetal Intestine Small	intestine
10	chr15:73254200-73255200	Enhancers	Fetal Intestine Large	intestine
11	chr15:73254400-73254800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr15:73254400-73254800	Enhancers	Fetal Muscle Trunk	muscle
13	chr15:73254400-73254800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
14	chr15:73254400-73256400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr15:73254600-73255000	Flanking Active TSS	Duodenum Mucosa	Duodenum
16	chr15:73254600-73258000	Weak transcription	Fetal Brain Male	brain

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