Variant report

Variant	rs11072401
Chromosome Location	chr15:73284093-73284094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73281450..73284379-chr15:73286906..73289508,2	MCF-7	breast:
2	chr15:73283925..73285701-chr15:73287876..73289544,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1080331	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1080332	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11072398	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11632783	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11639220	0.84[ASN][1000 genomes]
rs12438940	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12440392	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12441946	0.85[JPT][hapmap]
rs12442084	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12443302	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12592939	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12594272	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12901593	0.83[ASN][1000 genomes]
rs1375496	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1449267	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1449269	0.84[JPT][hapmap]
rs1466111	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1823338	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1839270	0.85[JPT][hapmap]
rs1839271	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1979106	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2415209	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28424084	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28451690	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28513521	0.84[ASN][1000 genomes]
rs28615518	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28647826	0.84[ASN][1000 genomes]
rs28666516	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28686814	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4076146	0.84[ASN][1000 genomes]
rs4260030	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4286085	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4297657	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4360901	0.83[ASN][1000 genomes]
rs4366688	0.83[ASN][1000 genomes]
rs4374145	0.83[ASN][1000 genomes]
rs4383117	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4468585	0.81[EUR][1000 genomes]
rs4522396	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4531709	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4572358	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4597288	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4776621	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4777577	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4777578	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55768020	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60557800	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62015256	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6495033	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6495037	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6495038	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6495039	0.83[ASN][1000 genomes]
rs6495040	0.83[ASN][1000 genomes]
rs7164304	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7164592	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7165104	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7165325	0.83[ASN][1000 genomes]
rs7165504	0.83[ASN][1000 genomes]
rs7166470	0.83[ASN][1000 genomes]
rs7178831	0.84[ASN][1000 genomes]
rs7180332	0.84[ASN][1000 genomes]
rs7183175	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8025463	0.91[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8025665	0.95[JPT][hapmap];0.81[AMR][1000 genomes]
rs8033793	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8033860	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8033954	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8034120	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8036013	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs921260	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs921261	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73278000-73286200	Weak transcription	Fetal Brain Male	brain
2	chr15:73282800-73284200	Enhancers	NHEK	skin
3	chr15:73282800-73284400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:73282800-73285600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr15:73283200-73285000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:73283400-73284200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:73283400-73285800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:73283600-73286000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:73283800-73285200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr15:73283800-73285800	Enhancers	Osteobl	bone
11	chr15:73284000-73284200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:73284000-73284200	Enhancers	Rectal Smooth Muscle	rectum
13	chr15:73284000-73284400	Enhancers	NH-A	brain
14	chr15:73284000-73284600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:73284000-73284800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:73284000-73285200	Enhancers	Colon Smooth Muscle	Colon
17	chr15:73284000-73285200	Enhancers	NHLF	lung
18	chr15:73284000-73287200	Enhancers	Ovary	ovary
19	chr15:73284000-73289800	Enhancers	Fetal Lung	lung
20	chr15:73284000-73294800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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