Variant report

Variant	rs4274746
Chromosome Location	chr3:94607649-94607650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11918924	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1374902	1.00[AMR][1000 genomes]
rs300302	1.00[AMR][1000 genomes]
rs4337639	1.00[AMR][1000 genomes]
rs4510376	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4588362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4642127	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4857472	1.00[AMR][1000 genomes]
rs7610104	1.00[AMR][1000 genomes]
rs7610499	1.00[AMR][1000 genomes]
rs9826923	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877168	chr3:94430430-94614333	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv460764	chr3:94479849-94654181	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv590989	chr3:94479849-94654181	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94594200-94610000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:94606600-94611600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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