Variant report
Variant | rs4275728 |
---|---|
Chromosome Location | chr13:94416035-94416036 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs34653710 | 0.82[AFR][1000 genomes] |
rs3924916 | 0.91[CEU][hapmap];0.84[EUR][1000 genomes] |
rs4337169 | 0.91[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.81[EUR][1000 genomes] |
rs4366594 | 0.87[CEU][hapmap];0.92[YRI][hapmap] |
rs4389020 | 0.91[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.82[EUR][1000 genomes] |
rs4517643 | 0.86[CEU][hapmap];0.92[YRI][hapmap] |
rs4558277 | 0.91[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.82[EUR][1000 genomes] |
rs4561306 | 0.82[CEU][hapmap] |
rs4597178 | 0.90[AFR][1000 genomes];0.81[EUR][1000 genomes] |
rs4773761 | 0.82[CEU][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.82[EUR][1000 genomes] |
rs7991676 | 0.90[AFR][1000 genomes];0.81[EUR][1000 genomes] |
rs7993028 | 0.90[AFR][1000 genomes];0.81[EUR][1000 genomes] |
rs7995215 | 0.91[CEU][hapmap];0.81[EUR][1000 genomes] |
rs8000099 | 0.88[AFR][1000 genomes];0.81[EUR][1000 genomes] |
rs8002496 | 0.90[AFR][1000 genomes];0.81[EUR][1000 genomes] |
rs9301905 | 0.84[AFR][1000 genomes];0.81[EUR][1000 genomes] |
rs9301906 | 0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs9524192 | 0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs9556314 | 0.86[JPT][hapmap] |
rs9584154 | 0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv948714 | chr13:94100104-94699435 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | nsv933807 | chr13:94187158-94845505 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv1045230 | chr13:94277683-94764671 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv933758 | chr13:94299302-94421378 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv916694 | chr13:94360053-94423063 | Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
6 | nsv832684 | chr13:94379507-94550853 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
7 | nsv1130 | chr13:94410849-94455628 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:94413800-94419800 | Weak transcription | Fetal Kidney | kidney |
2 | chr13:94414200-94416600 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
3 | chr13:94415800-94423600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |