Variant report

Variant	rs4277185
Chromosome Location	chr12:40273222-40273223
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10784221	0.91[CEU][hapmap]
rs10877703	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11174097	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs11174134	1.00[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12312400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1845962	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2029970	0.85[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7297386	0.80[ASN][1000 genomes]
rs7959014	0.80[YRI][hapmap]
rs7960814	0.81[AMR][1000 genomes]
rs7963790	0.95[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899025	chr12:40191778-40321846	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1049214	chr12:40197549-40326495	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40226400-40275000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr12:40262600-40280000	Weak transcription	Small Intestine	intestine
3	chr12:40271400-40273400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr12:40271600-40273800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:40271600-40274000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr12:40272000-40274000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr12:40272200-40273400	ZNF genes & repeats	Fetal Intestine Large	intestine
8	chr12:40272400-40274000	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr12:40272600-40273400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr12:40272600-40274000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
11	chr12:40272600-40274000	ZNF genes & repeats	Aorta	Aorta
12	chr12:40272800-40273400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr12:40273000-40274000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr12:40273000-40278400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr12:40273000-40286000	Weak transcription	Pancreas	Pancrea
16	chr12:40273200-40274000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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