Variant report

Variant rs427798
Chromosome Location chr17:19801821-19801822
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:19796400-19809800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr17:19798400-19804000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
3 chr17:19799200-19808400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr17:19799400-19803800 Weak transcription Thymus Thymus
5 chr17:19799400-19805000 Weak transcription Fetal Intestine Large intestine
6 chr17:19799600-19803800 Weak transcription Primary T cells from cord blood blood
7 chr17:19799800-19805200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
8 chr17:19799800-19806800 Weak transcription Brain Inferior Temporal Lobe brain
9 chr17:19799800-19807000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
10 chr17:19800000-19802200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
11 chr17:19800200-19802000 Enhancers A549 lung
12 chr17:19800200-19802200 Flanking Active TSS Hela-S3 cervix
13 chr17:19800200-19802200 Enhancers HSMMtube muscle
14 chr17:19800200-19804000 Weak transcription Primary T cells fromperipheralblood blood
15 chr17:19800400-19802000 Enhancers NHEK skin
16 chr17:19800400-19802200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr17:19800400-19802200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr17:19800400-19802400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
19 chr17:19800400-19802400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
20 chr17:19800600-19802200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr17:19800600-19802200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr17:19800600-19802200 Enhancers HSMM muscle
23 chr17:19800600-19802200 Enhancers NHDF-Ad bronchial
24 chr17:19800600-19802800 Weak transcription Primary neutrophils fromperipheralblood blood
25 chr17:19800600-19802800 Weak transcription Monocytes-CD14+_RO01746 blood
26 chr17:19800600-19803000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
27 chr17:19800600-19803000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
28 chr17:19800600-19807600 Weak transcription Brain Angular Gyrus brain
29 chr17:19800800-19802200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr17:19800800-19803000 Weak transcription Fetal Muscle Trunk muscle
31 chr17:19800800-19803000 Weak transcription Skeletal Muscle Female skeletal muscle
32 chr17:19800800-19803600 Weak transcription Fetal Lung lung
33 chr17:19800800-19803600 Weak transcription Ovary ovary
34 chr17:19800800-19803800 Weak transcription Liver Liver
35 chr17:19800800-19803800 Weak transcription Skeletal Muscle Male skeletal muscle
36 chr17:19801000-19803000 Weak transcription Primary monocytes fromperipheralblood blood
37 chr17:19801000-19803000 Weak transcription Pancreas Pancrea
38 chr17:19801000-19803800 Weak transcription Spleen Spleen
39 chr17:19801000-19808200 Weak transcription Left Ventricle heart
40 chr17:19801000-19808400 Weak transcription Esophagus oesophagus
41 chr17:19801200-19802200 Enhancers HUES64 Cell Line embryonic stem cell
42 chr17:19801200-19802200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr17:19801200-19802200 Enhancers ES-UCSF4 Cell Line embryonic stem cell
44 chr17:19801200-19802200 Enhancers HUVEC blood vessel
45 chr17:19801200-19802800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
46 chr17:19801200-19802800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
47 chr17:19801200-19803800 Weak transcription Rectal Mucosa Donor 29 rectum
48 chr17:19801200-19804000 Weak transcription Rectal Mucosa Donor 31 rectum
49 chr17:19801400-19802200 Enhancers iPS-15b Cell Line embryonic stem cell
50 chr17:19801400-19802200 Enhancers iPS-18 Cell Line embryonic stem cell

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