Variant report

Variant	rs4279178
Chromosome Location	chr4:47068580-47068581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4574382	0.81[JPT][hapmap]
rs4600895	0.92[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4645195	0.92[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6824550	0.92[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6846181	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7676327	0.81[JPT][hapmap]
rs7676887	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9686023	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9993388	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47054600-47075600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:47063800-47071200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:47064200-47073000	Weak transcription	NH-A	brain
4	chr4:47065200-47070600	Weak transcription	Osteobl	bone
5	chr4:47065400-47073200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:47066000-47069400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:47067600-47076800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr4:47067800-47069000	Weak transcription	Brain Anterior Caudate	brain
9	chr4:47067800-47069200	Weak transcription	Brain Substantia Nigra	brain
10	chr4:47068200-47078000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr4:47068400-47071000	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links