Variant report

Variant	rs6824550
Chromosome Location	chr4:47073095-47073096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2236781	0.81[JPT][hapmap]
rs4279178	0.92[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4499677	0.81[JPT][hapmap]
rs4574382	0.86[JPT][hapmap]
rs4600895	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4645195	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6447527	0.81[JPT][hapmap]
rs6447528	0.81[JPT][hapmap]
rs6846181	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7676327	0.86[JPT][hapmap]
rs7676887	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9686023	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9993388	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47054600-47075600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:47065400-47073200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:47067600-47076800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:47068200-47078000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:47069400-47073400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:47069400-47073400	Weak transcription	Brain Anterior Caudate	brain
7	chr4:47071800-47073200	Weak transcription	Osteobl	bone
8	chr4:47071800-47073400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:47071800-47073600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:47071800-47086600	Weak transcription	Fetal Lung	lung
11	chr4:47072600-47079200	Enhancers	Hela-S3	cervix
12	chr4:47073000-47074200	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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