Variant report

Variant	rs2236781
Chromosome Location	chr4:47035087-47035088
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:46846116..46847033-chr4:47034348..47035254,4	MCF-7	breast:
2	chr4:46933769..46934331-chr4:47034607..47035177,2	MCF-7	breast:
3	chr4:46939173..46939796-chr4:47034401..47035276,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10010460	0.92[CEU][hapmap]
rs12108581	0.97[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12108590	0.97[AFR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12108623	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12651299	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41309288	0.90[EUR][1000 genomes]
rs4368579	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4499677	0.92[CEU][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs45460902	0.81[AFR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4574382	0.93[CEU][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4645195	0.86[JPT][hapmap]
rs55698013	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55807334	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55962021	0.83[ASN][1000 genomes]
rs56984276	0.91[EUR][1000 genomes]
rs58651337	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58832969	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59535261	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62305280	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62305286	0.85[EUR][1000 genomes]
rs6447526	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6447527	0.92[CEU][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6447528	0.93[CEU][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66968475	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6824550	0.81[JPT][hapmap]
rs6828930	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6834421	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7356278	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7672943	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7676327	0.92[CEU][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7682625	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7686328	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7699999	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9999804	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47032600-47035200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr4:47032800-47035200	Active TSS	H9 Cell Line	embryonic stem cell
3	chr4:47032800-47035200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:47032800-47035400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr4:47032800-47035800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:47032800-47036000	Active TSS	Brain Hippocampus Middle	brain
7	chr4:47032800-47036200	Active TSS	Brain Anterior Caudate	brain
8	chr4:47033000-47035200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:47033000-47035200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:47033000-47035400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
11	chr4:47033000-47035400	Active TSS	Brain Substantia Nigra	brain
12	chr4:47033000-47035800	Active TSS	Brain Angular Gyrus	brain
13	chr4:47033000-47036600	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr4:47033200-47035200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:47033400-47035400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
16	chr4:47033400-47035400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
17	chr4:47033600-47035200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
18	chr4:47033600-47035200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:47033600-47035400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
20	chr4:47033600-47035400	Active TSS	Fetal Brain Female	brain
21	chr4:47034000-47035200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:47034000-47035200	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr4:47034200-47035200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
24	chr4:47034200-47035200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr4:47034200-47035200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:47034400-47035200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
27	chr4:47034600-47035200	Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr4:47034600-47035200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr4:47034600-47035200	Active TSS	Brain Germinal Matrix	brain
30	chr4:47034600-47035200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
31	chr4:47034600-47035200	Bivalent/Poised TSS	Fetal Stomach	stomach
32	chr4:47034800-47035200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr4:47034800-47035200	Bivalent/Poised TSS	Primary T helper naive cells from peripheral blood	blood
34	chr4:47034800-47035200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
35	chr4:47034800-47035200	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:47034800-47035200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr4:47034800-47035200	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
38	chr4:47034800-47035200	Flanking Active TSS	Brain Cingulate Gyrus	brain
39	chr4:47034800-47035200	Flanking Active TSS	Fetal Heart	heart
40	chr4:47034800-47035200	Bivalent Enhancer	Fetal Muscle Leg	muscle
41	chr4:47034800-47035200	Enhancers	Placenta Amnion	Placenta Amnion
42	chr4:47034800-47035200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
43	chr4:47034800-47035200	Flanking Active TSS	NH-A	brain
44	chr4:47034800-47035200	Enhancers	NHLF	lung
45	chr4:47035000-47035200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
46	chr4:47035000-47035200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr4:47035000-47035200	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr4:47035000-47035200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr4:47035000-47035200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
50	chr4:47035000-47035200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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