Variant report

Variant	rs45460902
Chromosome Location	chr4:47034075-47034076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11941209	0.82[ASN][1000 genomes]
rs12108581	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12108590	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12108623	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12651299	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1512143	0.81[ASN][1000 genomes]
rs2236781	0.81[AFR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41309288	0.89[EUR][1000 genomes]
rs4368579	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4499677	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4574382	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4597804	0.82[ASN][1000 genomes]
rs55698013	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55807334	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55962021	0.88[ASN][1000 genomes]
rs56984276	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58651337	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58832969	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59535261	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62303737	0.82[ASN][1000 genomes]
rs62305280	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62305286	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6447526	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6447527	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6447528	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66968475	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6828930	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6834421	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7356278	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7672943	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7676327	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7682625	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7686328	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7699999	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9999804	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47032600-47035200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr4:47032800-47035000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:47032800-47035000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:47032800-47035200	Active TSS	H9 Cell Line	embryonic stem cell
5	chr4:47032800-47035200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:47032800-47035400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr4:47032800-47035800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:47032800-47036000	Active TSS	Brain Hippocampus Middle	brain
9	chr4:47032800-47036200	Active TSS	Brain Anterior Caudate	brain
10	chr4:47033000-47034200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:47033000-47034200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
12	chr4:47033000-47034400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:47033000-47034400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
14	chr4:47033000-47034600	Active TSS	Aorta	Aorta
15	chr4:47033000-47034600	Active TSS	Right Ventricle	heart
16	chr4:47033000-47034800	Active TSS	Brain Cingulate Gyrus	brain
17	chr4:47033000-47035000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:47033000-47035000	Active TSS	Right Atrium	heart
19	chr4:47033000-47035200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:47033000-47035200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr4:47033000-47035400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
22	chr4:47033000-47035400	Active TSS	Brain Substantia Nigra	brain
23	chr4:47033000-47035800	Active TSS	Brain Angular Gyrus	brain
24	chr4:47033000-47036600	Active TSS	Brain Inferior Temporal Lobe	brain
25	chr4:47033200-47034200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:47033200-47034200	Active TSS	Colonic Mucosa	Colon
27	chr4:47033200-47034200	Active TSS	Fetal Brain Male	brain
28	chr4:47033200-47034200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
29	chr4:47033200-47034200	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
30	chr4:47033200-47034400	Flanking Bivalent TSS/Enh	HepG2	liver
31	chr4:47033200-47034600	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr4:47033200-47034600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
33	chr4:47033200-47034800	Flanking Active TSS	Liver	Liver
34	chr4:47033200-47035000	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:47033200-47035000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
36	chr4:47033200-47035000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
37	chr4:47033200-47035000	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
38	chr4:47033200-47035000	Active TSS	Rectal Smooth Muscle	rectum
39	chr4:47033200-47035000	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
40	chr4:47033200-47035200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr4:47033400-47034200	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 1	blood
42	chr4:47033400-47034200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr4:47033400-47034200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
44	chr4:47033400-47034200	Active TSS	Pancreas	Pancrea
45	chr4:47033400-47034400	Bivalent Enhancer	Placenta	Placenta
46	chr4:47033400-47034400	Enhancers	Placenta Amnion	Placenta Amnion
47	chr4:47033400-47034600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
48	chr4:47033400-47034600	Bivalent/Poised TSS	A549	lung
49	chr4:47033400-47034800	Bivalent/Poised TSS	Stomach Mucosa	stomach
50	chr4:47033400-47035000	Bivalent/Poised TSS	Primary T cells from cord blood	blood

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