Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12108581	0.90[ASN][1000 genomes]
rs12108590	0.91[ASN][1000 genomes]
rs12108623	0.91[ASN][1000 genomes]
rs12651299	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2236781	0.83[ASN][1000 genomes]
rs4368579	0.82[ASN][1000 genomes]
rs4499677	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs45460902	0.88[ASN][1000 genomes]
rs4574382	0.93[ASN][1000 genomes]
rs55698013	0.94[ASN][1000 genomes]
rs58651337	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs58832969	0.86[ASN][1000 genomes]
rs62305280	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62305286	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6447526	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6447527	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6447528	0.99[ASN][1000 genomes]
rs66968475	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6828930	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6834421	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7356278	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7672943	0.85[ASN][1000 genomes]
rs7676327	0.92[ASN][1000 genomes]
rs7682625	0.93[ASN][1000 genomes]
rs7686328	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7699999	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9999804	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47054000-47067000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:47054600-47075600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:47063800-47071200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:47064200-47073000	Weak transcription	NH-A	brain
5	chr4:47065200-47070600	Weak transcription	Osteobl	bone
6	chr4:47065400-47073200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:47066000-47069400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:47066600-47068400	Enhancers	Fetal Lung	lung
9	chr4:47066800-47067200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr4:47066800-47067200	Enhancers	Brain Substantia Nigra	brain
11	chr4:47066800-47067400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr4:47066800-47067800	Enhancers	Brain Anterior Caudate	brain
13	chr4:47066800-47068200	Enhancers	Brain Hippocampus Middle	brain

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