Variant report

Variant	rs6447528
Chromosome Location	chr4:47063167-47063168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10010460	0.85[CEU][hapmap]
rs10015366	0.89[YRI][hapmap]
rs12108581	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12108590	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12108623	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12651299	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2236781	0.93[CEU][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4315750	0.86[YRI][hapmap]
rs4368579	0.83[ASN][1000 genomes]
rs4499677	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45460902	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4574382	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4600895	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs55698013	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55962021	0.99[ASN][1000 genomes]
rs58651337	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58832969	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62305280	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62305286	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6447526	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6447527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66968475	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6824550	0.81[JPT][hapmap]
rs6828930	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6834421	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7356278	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7672943	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7676327	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7682625	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7686328	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7699999	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9999804	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47054000-47067000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:47054400-47066800	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:47054600-47063600	Weak transcription	Brain Anterior Caudate	brain
4	chr4:47054600-47066800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:47054600-47075600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:47062800-47064000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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