Variant report

Variant	rs4281301
Chromosome Location	chr1:215434194-215434195
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10494997	0.97[EUR][1000 genomes]
rs10779654	0.86[EUR][1000 genomes]
rs10779655	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10864162	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10864163	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10864164	0.86[EUR][1000 genomes]
rs11120522	0.86[EUR][1000 genomes]
rs11120528	0.92[EUR][1000 genomes]
rs11120531	0.94[EUR][1000 genomes]
rs11120540	0.97[EUR][1000 genomes]
rs11811604	0.91[EUR][1000 genomes]
rs12026152	0.94[EUR][1000 genomes]
rs12026702	0.83[AFR][1000 genomes]
rs12037855	0.81[AFR][1000 genomes]
rs12080135	0.86[EUR][1000 genomes]
rs12131712	0.95[EUR][1000 genomes]
rs12142076	0.97[EUR][1000 genomes]
rs12567503	0.85[EUR][1000 genomes]
rs1339399	0.97[EUR][1000 genomes]
rs1361342	0.97[EUR][1000 genomes]
rs1416651	0.96[EUR][1000 genomes]
rs1416656	0.97[EUR][1000 genomes]
rs1416661	0.81[AFR][1000 genomes]
rs1538544	0.83[AFR][1000 genomes]
rs2202679	0.97[EUR][1000 genomes]
rs4113098	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4360503	0.86[EUR][1000 genomes]
rs4539107	0.84[EUR][1000 genomes]
rs4633261	0.89[EUR][1000 genomes]
rs4655280	0.98[EUR][1000 genomes]
rs4655400	0.83[AFR][1000 genomes]
rs6671986	0.84[EUR][1000 genomes]
rs6674923	0.84[EUR][1000 genomes]
rs7512197	0.97[EUR][1000 genomes]
rs7516344	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7547867	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
2	nsv873170	chr1:215367248-215440975	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215433800-215434200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:215434000-215434600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:215434000-215435000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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