Variant report
| Variant | rs11811604 |
|---|---|
| Chromosome Location | chr1:215543661-215543662 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000232809 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10494997 | 0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10779654 | 0.84[EUR][1000 genomes] |
| rs10779655 | 0.87[EUR][1000 genomes] |
| rs10864162 | 0.82[EUR][1000 genomes] |
| rs10864163 | 0.84[EUR][1000 genomes] |
| rs10864164 | 0.84[EUR][1000 genomes] |
| rs11120522 | 0.84[EUR][1000 genomes] |
| rs11120528 | 0.89[EUR][1000 genomes] |
| rs11120531 | 0.91[EUR][1000 genomes] |
| rs11120540 | 0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12026152 | 0.91[EUR][1000 genomes] |
| rs12080135 | 0.84[EUR][1000 genomes] |
| rs12131712 | 0.92[EUR][1000 genomes] |
| rs12142076 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12567503 | 0.84[EUR][1000 genomes] |
| rs1339399 | 0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1339400 | 0.80[ASN][1000 genomes] |
| rs1361342 | 0.94[EUR][1000 genomes] |
| rs1416651 | 0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1416656 | 0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2202679 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4113098 | 0.82[EUR][1000 genomes] |
| rs4281301 | 0.91[EUR][1000 genomes] |
| rs4360503 | 0.84[EUR][1000 genomes] |
| rs4539107 | 0.83[EUR][1000 genomes] |
| rs4633261 | 0.86[EUR][1000 genomes] |
| rs4655280 | 0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs56089057 | 0.95[ASN][1000 genomes] |
| rs56284908 | 0.92[ASN][1000 genomes] |
| rs6671986 | 0.83[EUR][1000 genomes] |
| rs6674923 | 0.83[EUR][1000 genomes] |
| rs72737267 | 0.80[ASN][1000 genomes] |
| rs7512197 | 0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7516344 | 0.87[EUR][1000 genomes] |
| rs7547867 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832537 | chr1:215509026-215705105 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
