Variant report

Variant	rs428363
Chromosome Location	chr4:77771139-77771140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr4:77771103-77771653	A549	lung:	n/a	n/a
2	GATA3	chr4:77770986-77771711	SK-N-SH	brain:	n/a	n/a
3	TCF12	chr4:77770953-77771601	MCF-7	breast:	n/a	n/a
4	TCF7L2	chr4:77771072-77771600	HCT-116	colon:	n/a	n/a
5	ATF3	chr4:77771064-77771530	A549	lung:	n/a	n/a
6	TEAD4	chr4:77771102-77771604	HepG2	liver:	n/a	n/a
7	GATA3	chr4:77771100-77771712	MCF-7	breast:	n/a	n/a
8	EP300	chr4:77770934-77771720	A549	lung:	n/a	n/a
9	RCOR1	chr4:77771107-77771535	Hela-S3	cervix:	n/a	n/a
10	TCF12	chr4:77771111-77771646	SK-N-SH	brain:	n/a	n/a
11	TCF12	chr4:77771024-77771709	SK-N-SH	brain:	n/a	n/a
12	CEBPB	chr4:77771118-77771635	MCF-7	breast:	n/a	chr4:77771361-77771372
13	BCL3	chr4:77771070-77771592	A549	lung:	n/a	chr4:77771398-77771407
14	FOSL2	chr4:77770958-77771704	A549	lung:	n/a	n/a
15	BCL3	chr4:77770959-77771727	A549	lung:	n/a	chr4:77771398-77771407
16	GATA3	chr4:77770963-77771889	A549	lung:	n/a	n/a
17	TCF12	chr4:77771120-77771662	MCF-7	breast:	n/a	n/a
18	CEBPB	chr4:77771135-77771707	A549	lung:	n/a	chr4:77771361-77771372
19	RCOR1	chr4:77771020-77771677	IMR90	lung:	n/a	n/a
20	TCF7L2	chr4:77771011-77771549	MCF-7	breast:	n/a	n/a
21	POLR2A	chr4:77771136-77771587	PANC-1	pancreas:	n/a	n/a
22	NR2F2	chr4:77771061-77771670	MCF-7	breast:	n/a	n/a
23	FOXA1	chr4:77771118-77771483	HepG2	liver:	n/a	n/a
24	SP1	chr4:77770931-77771695	A549	lung:	n/a	n/a
25	FOXA1	chr4:77771130-77771587	HepG2	liver:	n/a	n/a
26	SIN3AK20	chr4:77771035-77771849	MCF-7	breast:	n/a	n/a
27	EP300	chr4:77770993-77771788	A549	lung:	n/a	n/a
28	TCF7L2	chr4:77770745-77771608	PANC-1	pancreas:	n/a	chr4:77770750-77770766 chr4:77770753-77770762 chr4:77770750-77770766 chr4:77770751-77770765
29	GATA3	chr4:77770992-77771720	A549	lung:	n/a	n/a
30	GABPA	chr4:77771079-77771547	A549	lung:	n/a	n/a
31	JUND	chr4:77771054-77771689	A549	lung:	n/a	n/a
32	NFIC	chr4:77771095-77771734	SK-N-SH	brain:	n/a	n/a
33	FOXA2	chr4:77771065-77771706	A549	lung:	n/a	n/a
34	SP1	chr4:77771010-77771727	A549	lung:	n/a	n/a
35	TEAD4	chr4:77771036-77771649	A549	lung:	n/a	n/a
36	SIN3AK20	chr4:77771047-77771673	MCF-7	breast:	n/a	n/a
37	GATA3	chr4:77771111-77771674	SK-N-SH	brain:	n/a	n/a
38	CEBPB	chr4:77771054-77771659	HCT-116	colon:	n/a	chr4:77771361-77771372
39	TCF12	chr4:77770825-77771799	A549	lung:	n/a	n/a
40	TCF7L2	chr4:77771059-77771593	Hela-S3	cervix:	n/a	n/a
41	GATA3	chr4:77771024-77771664	MCF-7	breast:	n/a	n/a
42	HDAC2	chr4:77771080-77771640	MCF-7	breast:	n/a	n/a
43	ZNF217	chr4:77771129-77771593	MCF-7	breast:	n/a	n/a
44	FOSL1	chr4:77771126-77771656	HCT-116	colon:	n/a	n/a
45	REST	chr4:77771086-77771598	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77770087..77772547-chr4:77819066..77820828,2	MCF-7	breast:
2	chr4:77769927..77772926-chr4:77868534..77870664,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264124	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2016811	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829973	chr4:77684251-77877361	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77770400-77771600	Enhancers	A549	lung
2	chr4:77770600-77771200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:77770600-77773000	Enhancers	Hela-S3	cervix
4	chr4:77770600-77773800	Enhancers	HepG2	liver
5	chr4:77770800-77771400	Enhancers	HMEC	breast
6	chr4:77771000-77771200	Enhancers	Fetal Intestine Small	intestine
7	chr4:77771000-77771400	Enhancers	Liver	Liver
8	chr4:77771000-77771400	Enhancers	Duodenum Mucosa	Duodenum
9	chr4:77771000-77771400	Enhancers	NH-A	brain
10	chr4:77771000-77771400	Enhancers	NHEK	skin
11	chr4:77771000-77771400	Enhancers	Osteobl	bone
12	chr4:77771000-77771800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:77771000-77771800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:77771000-77772000	Enhancers	Muscle Satellite Cultured Cells	--

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