Variant report

Variant	rs4295264
Chromosome Location	chr4:106903965-106903966
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs13105287	0.85[AMR][1000 genomes]
rs13132677	0.84[AMR][1000 genomes]
rs13138279	0.82[AMR][1000 genomes]
rs13147201	0.87[AMR][1000 genomes]
rs13147392	0.87[AMR][1000 genomes]
rs13150451	0.83[AMR][1000 genomes]
rs13151138	0.82[AMR][1000 genomes]
rs17258724	0.81[AMR][1000 genomes]
rs1893717	0.85[AMR][1000 genomes]
rs1893719	0.85[AMR][1000 genomes]
rs1893720	0.84[AMR][1000 genomes]
rs2156508	0.87[AMR][1000 genomes]
rs2156509	0.87[AMR][1000 genomes]
rs2156510	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2187357	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28788806	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28838601	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs28863615	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs28877053	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34000647	0.87[AMR][1000 genomes]
rs34160816	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34371905	0.87[AMR][1000 genomes]
rs34725554	0.96[AMR][1000 genomes]
rs35270545	0.81[AMR][1000 genomes]
rs35304718	0.96[AMR][1000 genomes]
rs35363492	0.87[AMR][1000 genomes]
rs35436827	0.90[AMR][1000 genomes]
rs4320139	0.86[AMR][1000 genomes]
rs4416482	0.84[AFR][1000 genomes]
rs4463072	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4507364	0.87[AMR][1000 genomes]
rs6419173	0.89[AMR][1000 genomes]
rs6533229	0.93[AMR][1000 genomes]
rs6533230	0.86[AMR][1000 genomes]
rs6533231	0.87[AMR][1000 genomes]
rs6533232	0.87[AMR][1000 genomes]
rs66720770	0.89[AMR][1000 genomes]
rs6826176	0.82[AMR][1000 genomes]
rs6840126	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71599076	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71599077	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71599078	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7659168	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7669422	0.87[AMR][1000 genomes]
rs7670195	0.85[AMR][1000 genomes]
rs7670232	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7671109	0.86[AMR][1000 genomes]
rs7676845	0.87[AMR][1000 genomes]
rs7677290	0.87[AMR][1000 genomes]
rs7683740	0.84[AMR][1000 genomes]
rs7683941	0.86[AMR][1000 genomes]
rs7691229	0.87[AMR][1000 genomes]
rs7691244	0.87[AMR][1000 genomes]
rs7691395	0.87[AMR][1000 genomes]
rs7691403	0.87[AMR][1000 genomes]
rs7691953	0.87[AMR][1000 genomes]
rs869928	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4295264	SCYE1	Cis_1M	lymphoblastoid	RTeQTL
rs4295264	MGC16169	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106885400-106909800	Weak transcription	Aorta	Aorta

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