Variant report
| Variant | rs4463072 |
|---|---|
| Chromosome Location | chr4:106905140-106905141 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs13147201 | 0.81[AFR][1000 genomes] |
| rs13147392 | 0.81[AFR][1000 genomes] |
| rs2156508 | 0.81[AFR][1000 genomes] |
| rs2156509 | 0.81[AFR][1000 genomes] |
| rs2156510 | 0.83[AMR][1000 genomes] |
| rs2187357 | 0.88[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs28788806 | 0.96[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs28838601 | 0.88[AFR][1000 genomes] |
| rs28863615 | 0.88[AFR][1000 genomes] |
| rs28877053 | 0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs34000647 | 0.81[AFR][1000 genomes] |
| rs34160816 | 0.85[AMR][1000 genomes] |
| rs34371905 | 0.81[AFR][1000 genomes] |
| rs34725554 | 0.84[AMR][1000 genomes] |
| rs35304718 | 0.84[AMR][1000 genomes] |
| rs35363492 | 0.81[AFR][1000 genomes] |
| rs35436827 | 0.80[AFR][1000 genomes] |
| rs4295264 | 0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4416482 | 0.95[AFR][1000 genomes] |
| rs6419173 | 0.81[AFR][1000 genomes] |
| rs6533229 | 0.81[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs6533230 | 0.81[AFR][1000 genomes] |
| rs6840126 | 0.85[AMR][1000 genomes] |
| rs71599076 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs71599077 | 0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs71599078 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7659168 | 0.96[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs7670232 | 0.83[AMR][1000 genomes] |
| rs7676845 | 0.81[AFR][1000 genomes] |
| rs7677290 | 0.81[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014993 | chr4:106796019-106980727 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv522792 | chr4:106895964-106982793 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:106885400-106909800 | Weak transcription | Aorta | Aorta |
