Variant report
| Variant | rs4295402 |
|---|---|
| Chromosome Location | chr5:30242594-30242595 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11948380 | 0.89[ASN][1000 genomes] |
| rs11953269 | 0.89[ASN][1000 genomes] |
| rs13159063 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16899990 | 0.89[ASN][1000 genomes] |
| rs16900007 | 0.89[ASN][1000 genomes] |
| rs28870420 | 0.89[ASN][1000 genomes] |
| rs4282330 | 0.89[ASN][1000 genomes] |
| rs4337863 | 0.89[ASN][1000 genomes] |
| rs4343853 | 0.89[ASN][1000 genomes] |
| rs4386744 | 0.89[ASN][1000 genomes] |
| rs4605801 | 0.80[ASN][1000 genomes] |
| rs4867031 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs4867257 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4867259 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs57503003 | 0.89[ASN][1000 genomes] |
| rs59615654 | 0.89[ASN][1000 genomes] |
| rs60373268 | 0.82[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6860184 | 0.82[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6872827 | 0.89[ASN][1000 genomes] |
| rs73084983 | 0.89[ASN][1000 genomes] |
| rs7733219 | 0.89[ASN][1000 genomes] |
| rs7733353 | 0.86[ASN][1000 genomes] |
| rs7735950 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv881635 | chr5:30122190-30371238 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv915858 | chr5:30176470-31018294 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv881357 | chr5:30226419-30371238 | Enhancers Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv521010 | chr5:30242594-30257642 | Enhancers Weak transcription | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:30242400-30242800 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
