Variant report

Variant	rs4298437
Chromosome Location	chr7:103625877-103625878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12540614	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[MEX][hapmap]
rs4305831	1.00[ASN][1000 genomes]
rs4489256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4729943	1.00[CHB][hapmap];0.89[MEX][hapmap]
rs62488860	1.00[ASN][1000 genomes]
rs6465951	1.00[CHB][hapmap]
rs6975845	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7800855	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];1.00[ASN][1000 genomes]

Variant related diseases (count:1)

Disease	PMID	Source
Alzheimer's disease	20452100	GWAS catalog

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4298437	SERPINE1	cis	parietal	SCAN
rs4298437	TRIP6	cis	cerebellum	SCAN
rs4298437	PMS2L1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103613800-103627800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:103625600-103626600	Flanking Active TSS	HepG2	liver
3	chr7:103625800-103626400	Genic enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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