Variant report

Variant	rs7800855
Chromosome Location	chr7:103627810-103627811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10237086	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs12111672	0.80[EUR][1000 genomes]
rs12540614	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13241016	0.81[EUR][1000 genomes]
rs34721336	0.80[EUR][1000 genomes]
rs34738779	0.90[EUR][1000 genomes]
rs35252264	0.80[EUR][1000 genomes]
rs35252328	0.81[EUR][1000 genomes]
rs4236566	0.82[EUR][1000 genomes]
rs4259349	0.80[EUR][1000 genomes]
rs4291202	0.83[EUR][1000 genomes]
rs4298437	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];1.00[ASN][1000 genomes]
rs4305831	0.95[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4424197	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs4425676	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs4460305	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs4473962	0.82[EUR][1000 genomes]
rs4475416	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs4483088	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs4489256	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4621738	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs4636135	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs4727579	0.81[CEU][hapmap]
rs4727584	0.96[EUR][1000 genomes]
rs4729943	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[MEX][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57049078	0.80[EUR][1000 genomes]
rs60769146	0.80[EUR][1000 genomes]
rs62488860	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6465948	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs6465951	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs6465952	0.90[EUR][1000 genomes]
rs67196278	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6949973	0.86[EUR][1000 genomes]
rs6950228	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs6955789	0.80[EUR][1000 genomes]
rs6957898	0.82[EUR][1000 genomes]
rs6961175	0.80[EUR][1000 genomes]
rs6965639	0.80[EUR][1000 genomes]
rs6966127	0.80[EUR][1000 genomes]
rs6966767	0.82[EUR][1000 genomes]
rs6967863	0.86[EUR][1000 genomes]
rs6971036	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs6971140	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs6971418	0.82[EUR][1000 genomes]
rs6972426	0.86[EUR][1000 genomes]
rs6975845	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs6976042	0.81[EUR][1000 genomes]
rs7782058	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs7785983	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs7787670	0.82[EUR][1000 genomes]
rs7787675	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs9632691	0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7800855	SERPINE1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103626600-103629000	Active TSS	HepG2	liver
2	chr7:103627600-103628000	Transcr. at gene 5' and 3'	K562	blood
3	chr7:103627800-103628000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung

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