Variant report

Variant	rs6955789
Chromosome Location	chr7:103637906-103637907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103636664..103638989-chr7:103639066..103642018,4	K562	blood:
2	chr7:103636513..103639487-chr7:103645441..103647479,2	K562	blood:
3	chr7:103636664..103638989-chr7:103639066..103643319,4	K562	blood:
4	chr7:103296674..103299385-chr7:103636597..103638114,2	K562	blood:
5	chr7:103632737..103634639-chr7:103635912..103638450,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11982003	1.00[JPT][hapmap]
rs12111672	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12113013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12540614	1.00[ASW][hapmap];0.81[CEU][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];0.95[LWK][hapmap];0.87[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13241016	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17324209	1.00[JPT][hapmap]
rs34721336	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35252264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35252328	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4298437	0.86[CHB][hapmap];0.90[CHD][hapmap]
rs4305831	0.80[EUR][1000 genomes]
rs4489256	0.86[CHB][hapmap]
rs4727584	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4729943	0.81[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57049078	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60769146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6465951	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs67196278	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6949973	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6961175	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6965639	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6966127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967863	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6972426	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7800855	0.86[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888924	chr7:103637906-103706936	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103636600-103638000	Enhancers	Liver	Liver
2	chr7:103636600-103638000	Enhancers	HepG2	liver
3	chr7:103637600-103638200	Genic enhancers	K562	blood

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