Variant report

Variant	rs17324209
Chromosome Location	chr7:103780119-103780120
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103769885..103772805-chr7:103778154..103780939,3	K562	blood:
2	chr7:103779479..103781336-chr7:103797104..103798810,2	MCF-7	breast:
3	chr7:103754828..103757477-chr7:103778721..103780963,2	MCF-7	breast:
4	chr7:103774534..103776451-chr7:103778597..103780870,2	K562	blood:
5	chr7:103773857..103776451-chr7:103778277..103781105,4	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10231179	0.80[CEU][hapmap]
rs10239281	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs10269939	0.82[CEU][hapmap]
rs10953404	0.85[EUR][1000 genomes]
rs10953406	0.84[CEU][hapmap]
rs11773168	0.85[EUR][1000 genomes]
rs11978569	0.88[EUR][1000 genomes]
rs11982003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984388	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs12705177	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs194829	0.82[EUR][1000 genomes]
rs194836	0.91[CEU][hapmap]
rs194839	0.88[EUR][1000 genomes]
rs194840	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs194842	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs194850	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs194852	0.86[EUR][1000 genomes]
rs194853	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs194854	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs194855	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs194856	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs194862	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs194863	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs194864	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs194866	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs2058720	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs2058721	0.81[EUR][1000 genomes]
rs2075218	0.84[CEU][hapmap]
rs2075220	0.86[CEU][hapmap]
rs2192965	0.81[CEU][hapmap]
rs2299407	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs2307405	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3087358	0.83[CEU][hapmap]
rs3808011	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs3808012	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs3808013	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs3808014	0.83[EUR][1000 genomes]
rs3808015	0.85[EUR][1000 genomes]
rs3823978	0.83[EUR][1000 genomes]
rs55848	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs62485900	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6944360	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs6944653	0.86[EUR][1000 genomes]
rs6948723	0.83[CEU][hapmap]
rs6952639	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs6979022	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs6979695	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs7350041	0.81[CEU][hapmap]
rs741325	0.81[CEU][hapmap]
rs7806228	0.81[CEU][hapmap]
rs9641322	0.86[CEU][hapmap]
rs971813	0.84[CEU][hapmap]
rs9791845	0.82[CEU][hapmap]

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103763800-103815000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:103764000-103783200	Weak transcription	NHLF	lung
3	chr7:103764000-103829800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:103764400-103820200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr7:103765600-103815000	Weak transcription	Brain Angular Gyrus	brain
6	chr7:103765600-103840200	Weak transcription	Small Intestine	intestine
7	chr7:103766200-103800000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:103766200-103803800	Weak transcription	Pancreas	Pancrea
9	chr7:103766200-103816000	Weak transcription	Brain Substantia Nigra	brain
10	chr7:103766200-103823600	Weak transcription	Esophagus	oesophagus
11	chr7:103766200-103838400	Weak transcription	Spleen	Spleen
12	chr7:103766400-103822600	Weak transcription	Colon Smooth Muscle	Colon
13	chr7:103767200-103829200	Weak transcription	Gastric	stomach
14	chr7:103767200-103843600	Weak transcription	Right Ventricle	heart
15	chr7:103767600-103820200	Weak transcription	Brain Germinal Matrix	brain
16	chr7:103769200-103822600	Weak transcription	Fetal Kidney	kidney
17	chr7:103771800-103800000	Weak transcription	HSMM	muscle
18	chr7:103771800-103804400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr7:103771800-103807200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr7:103771800-103820000	Weak transcription	NHEK	skin
21	chr7:103772200-103792000	Weak transcription	Aorta	Aorta
22	chr7:103773200-103822800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr7:103773400-103782600	Weak transcription	HUVEC	blood vessel
24	chr7:103773600-103781000	Weak transcription	HSMMtube	muscle
25	chr7:103774600-103781000	Weak transcription	HepG2	liver
26	chr7:103774600-103803600	Weak transcription	Ovary	ovary
27	chr7:103774800-103802800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr7:103775200-103829200	Weak transcription	Lung	lung
29	chr7:103775400-103803400	Weak transcription	Left Ventricle	heart
30	chr7:103775800-103803800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr7:103776800-103781200	Weak transcription	A549	lung
32	chr7:103776800-103803800	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr7:103776800-103820200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr7:103776800-103822800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr7:103777000-103799800	Weak transcription	K562	blood
36	chr7:103777000-103803000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr7:103777000-103803800	Weak transcription	Brain Hippocampus Middle	brain
38	chr7:103777000-103804600	Weak transcription	Colonic Mucosa	Colon
39	chr7:103777000-103804800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr7:103777000-103805200	Weak transcription	Placenta	Placenta
41	chr7:103777000-103819600	Weak transcription	Fetal Brain Female	brain
42	chr7:103777200-103781000	Weak transcription	Primary B cells from cord blood	blood
43	chr7:103777200-103781600	Weak transcription	Dnd41	blood
44	chr7:103777200-103805000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr7:103777200-103819400	Weak transcription	GM12878-XiMat	blood
46	chr7:103777400-103780800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr7:103777400-103782200	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr7:103777400-103801600	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr7:103777400-103803400	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr7:103777400-103805000	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links