Variant report

Variant	rs3823978
Chromosome Location	chr7:103803842-103803843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103797361..103801300-chr7:103803065..103805053,3	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10236259	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10236401	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10239281	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10246176	0.80[AMR][1000 genomes]
rs10265732	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10265960	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10265985	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10269939	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1035168	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10953406	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10953407	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10953409	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10953410	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11773168	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11973848	0.85[EUR][1000 genomes]
rs11980573	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11982003	0.83[EUR][1000 genomes]
rs11984388	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12705177	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12705185	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12705189	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13438174	0.80[AMR][1000 genomes]
rs13438176	0.80[AMR][1000 genomes]
rs13438761	0.80[AMR][1000 genomes]
rs17324209	0.83[EUR][1000 genomes]
rs194826	0.83[ASN][1000 genomes]
rs194827	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs194829	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs194839	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs194840	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194842	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194844	0.87[ASN][1000 genomes]
rs194845	0.83[ASN][1000 genomes]
rs194850	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194852	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs194853	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194854	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194855	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs194856	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs194860	0.86[ASN][1000 genomes]
rs194862	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs194863	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs194864	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs194866	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2058720	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2058721	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2075217	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2075218	0.86[EUR][1000 genomes]
rs2075219	0.85[EUR][1000 genomes]
rs2075220	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2192965	0.80[AMR][1000 genomes]
rs2299407	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2307400	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2307405	0.85[EUR][1000 genomes]
rs28372965	0.85[EUR][1000 genomes]
rs3087358	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3808011	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3808012	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3808013	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3808014	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3808015	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4370467	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4445159	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4486111	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4529396	0.82[EUR][1000 genomes]
rs4729959	0.85[EUR][1000 genomes]
rs4729960	0.84[EUR][1000 genomes]
rs4729962	0.86[ASN][1000 genomes]
rs4729963	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55848	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62485900	0.83[EUR][1000 genomes]
rs6944360	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6944653	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6948440	0.81[AMR][1000 genomes]
rs6948673	0.81[AMR][1000 genomes]
rs6948723	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6948967	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6952639	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6962612	0.81[AMR][1000 genomes]
rs6962673	0.81[AMR][1000 genomes]
rs6968451	0.81[AMR][1000 genomes]
rs6975834	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6979022	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6979695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7350041	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs741325	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7795570	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7806228	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9641322	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9656092	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs971813	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9791845	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103763800-103815000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:103764000-103829800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:103764400-103820200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr7:103765600-103815000	Weak transcription	Brain Angular Gyrus	brain
5	chr7:103765600-103840200	Weak transcription	Small Intestine	intestine
6	chr7:103766200-103816000	Weak transcription	Brain Substantia Nigra	brain
7	chr7:103766200-103823600	Weak transcription	Esophagus	oesophagus
8	chr7:103766200-103838400	Weak transcription	Spleen	Spleen
9	chr7:103766400-103822600	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:103767200-103829200	Weak transcription	Gastric	stomach
11	chr7:103767200-103843600	Weak transcription	Right Ventricle	heart
12	chr7:103767600-103820200	Weak transcription	Brain Germinal Matrix	brain
13	chr7:103769200-103822600	Weak transcription	Fetal Kidney	kidney
14	chr7:103771800-103804400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr7:103771800-103807200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr7:103771800-103820000	Weak transcription	NHEK	skin
17	chr7:103773200-103822800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr7:103775200-103829200	Weak transcription	Lung	lung
19	chr7:103776800-103820200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr7:103776800-103822800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr7:103777000-103804600	Weak transcription	Colonic Mucosa	Colon
22	chr7:103777000-103804800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr7:103777000-103805200	Weak transcription	Placenta	Placenta
24	chr7:103777000-103819600	Weak transcription	Fetal Brain Female	brain
25	chr7:103777200-103805000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr7:103777200-103819400	Weak transcription	GM12878-XiMat	blood
27	chr7:103777400-103805000	Weak transcription	HMEC	breast
28	chr7:103777400-103819800	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr7:103778800-103804600	Weak transcription	Osteobl	bone
30	chr7:103779000-103806800	Weak transcription	NH-A	brain
31	chr7:103779200-103811600	Weak transcription	NHDF-Ad	bronchial
32	chr7:103779200-103815000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr7:103779200-103815000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr7:103781600-103822800	Weak transcription	HSMMtube	muscle
35	chr7:103781800-103822400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr7:103783600-103812000	Weak transcription	HUVEC	blood vessel
37	chr7:103791200-103822800	Weak transcription	Brain Anterior Caudate	brain
38	chr7:103791400-103811000	Weak transcription	Fetal Lung	lung
39	chr7:103791800-103819200	Weak transcription	HepG2	liver
40	chr7:103792800-103815000	Weak transcription	Aorta	Aorta
41	chr7:103796400-103843600	Weak transcription	Fetal Brain Male	brain
42	chr7:103797200-103847000	Weak transcription	Fetal Heart	heart
43	chr7:103797400-103822600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr7:103797600-103817000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr7:103798400-103815000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr7:103798400-103829600	Weak transcription	Rectal Smooth Muscle	rectum
47	chr7:103798600-103812400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr7:103798600-103819600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr7:103799400-103808400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr7:103799400-103809000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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