Variant report

Variant	rs194827
Chromosome Location	chr7:103752743-103752744
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103558897..103560553-chr7:103751201..103753362,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10231189	0.81[CEU][hapmap]
rs10239281	0.87[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1024817	0.82[JPT][hapmap]
rs10269939	0.91[JPT][hapmap]
rs1035168	0.86[JPT][hapmap]
rs11773168	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11982003	0.83[CEU][hapmap]
rs11984388	0.91[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12537685	0.80[TSI][hapmap]
rs12705177	0.91[CEU][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12705185	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12705189	0.91[JPT][hapmap];0.80[AMR][1000 genomes]
rs17324209	0.83[CEU][hapmap]
rs194826	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194829	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs194836	0.91[CEU][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.91[TSI][hapmap]
rs194839	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs194840	0.91[CEU][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs194842	0.91[CEU][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs194845	0.82[JPT][hapmap]
rs194850	0.91[CEU][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs194852	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs194853	0.91[CEU][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs194854	0.91[CEU][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs194855	0.83[CEU][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]
rs194856	0.87[CEU][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes]
rs194860	0.82[JPT][hapmap]
rs194862	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs194863	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs194864	0.87[CEU][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs194866	0.83[CEU][hapmap];0.90[EUR][1000 genomes]
rs2058720	0.85[CEU][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2058721	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2075220	0.85[CEU][hapmap]
rs2299407	0.91[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2307400	0.82[CEU][hapmap];0.95[JPT][hapmap]
rs3808011	0.91[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3808012	0.91[CEU][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3808013	0.91[CEU][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3808014	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3808015	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3823978	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4486111	0.80[TSI][hapmap]
rs4729959	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4729960	0.83[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4729962	0.82[JPT][hapmap]
rs4729973	0.90[JPT][hapmap]
rs55848	0.91[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6944360	0.91[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6944653	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6948723	0.82[CEU][hapmap]
rs6952639	0.91[CEU][hapmap];0.87[JPT][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6975834	0.91[JPT][hapmap];0.80[TSI][hapmap];0.80[EUR][1000 genomes]
rs6979022	0.91[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6979695	0.91[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs714519	0.82[JPT][hapmap]
rs73187435	0.81[EUR][1000 genomes]
rs73189312	0.86[ASN][1000 genomes]
rs7350041	0.91[JPT][hapmap]
rs741325	0.91[JPT][hapmap]
rs7778396	0.84[JPT][hapmap]
rs7795570	0.91[JPT][hapmap]
rs7806228	0.91[JPT][hapmap];0.83[AMR][1000 genomes]
rs9641322	0.87[CEU][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103751400-103753600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:103752000-103765000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:103752200-103765400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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