Variant report

Variant	rs194862
Chromosome Location	chr7:103786280-103786281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103784029..103786538-chr7:103792579..103795162,2	K562	blood:
2	chr7:103785594..103788558-chr7:103959562..103962254,2	K562	blood:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10231179	0.86[CEU][hapmap]
rs10231189	0.85[CEU][hapmap]
rs10236259	0.80[EUR][1000 genomes]
rs10236401	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs10239281	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10265732	0.81[EUR][1000 genomes]
rs10265960	0.81[EUR][1000 genomes]
rs10265985	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs10269939	0.83[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1035168	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10953406	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs10953407	0.80[EUR][1000 genomes]
rs10953409	0.80[EUR][1000 genomes]
rs10953410	0.80[EUR][1000 genomes]
rs11773168	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11980573	0.80[EUR][1000 genomes]
rs11982003	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs11984388	0.95[CEU][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12535884	0.85[CEU][hapmap]
rs12537665	0.85[CEU][hapmap]
rs12537685	0.85[CEU][hapmap]
rs12667514	0.84[CEU][hapmap]
rs12669853	0.85[CEU][hapmap]
rs12705177	0.95[CEU][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12705185	0.84[EUR][1000 genomes]
rs12705189	0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs1557663	0.81[CEU][hapmap]
rs17324209	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs194827	0.90[EUR][1000 genomes]
rs194829	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs194836	0.95[CEU][hapmap]
rs194837	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs194838	0.93[AFR][1000 genomes]
rs194839	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs194840	0.95[CEU][hapmap];0.80[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs194842	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs194844	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs194850	0.95[CEU][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs194852	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs194853	0.95[CEU][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs194854	0.95[CEU][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs194855	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs194856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194861	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs194863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs194864	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs194866	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2058720	0.83[CEU][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2058721	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2075217	0.81[EUR][1000 genomes]
rs2075218	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs2075219	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs2075220	0.90[CEU][hapmap];0.80[EUR][1000 genomes]
rs2192965	0.86[CEU][hapmap]
rs2299407	0.95[CEU][hapmap];0.81[CHB][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2307400	0.85[CEU][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2307405	0.81[EUR][1000 genomes]
rs3087358	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs3808011	0.95[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3808012	0.95[CEU][hapmap];0.84[JPT][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3808013	0.95[CEU][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3808014	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3808015	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3823978	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4486111	0.85[CEU][hapmap]
rs4636136	0.85[CEU][hapmap]
rs4729959	0.88[EUR][1000 genomes]
rs4729960	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs4729963	0.82[EUR][1000 genomes]
rs4729973	0.85[CEU][hapmap]
rs55848	0.95[CEU][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62485900	0.83[EUR][1000 genomes]
rs6944360	0.95[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6944653	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6946357	0.85[CEU][hapmap]
rs6948723	0.90[CEU][hapmap]
rs6948967	0.80[EUR][1000 genomes]
rs6952639	0.95[CEU][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6975834	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6979022	0.95[CEU][hapmap];0.81[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6979695	0.95[CEU][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73187435	0.80[EUR][1000 genomes]
rs7350041	0.86[CEU][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs741325	0.86[CEU][hapmap];0.81[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7795570	0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7806228	0.86[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs9641322	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9656092	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs971813	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs9791845	0.85[CEU][hapmap];0.81[EUR][1000 genomes]

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103763800-103815000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:103764000-103829800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:103764400-103820200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr7:103765600-103815000	Weak transcription	Brain Angular Gyrus	brain
5	chr7:103765600-103840200	Weak transcription	Small Intestine	intestine
6	chr7:103766200-103800000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:103766200-103803800	Weak transcription	Pancreas	Pancrea
8	chr7:103766200-103816000	Weak transcription	Brain Substantia Nigra	brain
9	chr7:103766200-103823600	Weak transcription	Esophagus	oesophagus
10	chr7:103766200-103838400	Weak transcription	Spleen	Spleen
11	chr7:103766400-103822600	Weak transcription	Colon Smooth Muscle	Colon
12	chr7:103767200-103829200	Weak transcription	Gastric	stomach
13	chr7:103767200-103843600	Weak transcription	Right Ventricle	heart
14	chr7:103767600-103820200	Weak transcription	Brain Germinal Matrix	brain
15	chr7:103769200-103822600	Weak transcription	Fetal Kidney	kidney
16	chr7:103771800-103800000	Weak transcription	HSMM	muscle
17	chr7:103771800-103804400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr7:103771800-103807200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr7:103771800-103820000	Weak transcription	NHEK	skin
20	chr7:103772200-103792000	Weak transcription	Aorta	Aorta
21	chr7:103773200-103822800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr7:103774600-103803600	Weak transcription	Ovary	ovary
23	chr7:103774800-103802800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr7:103775200-103829200	Weak transcription	Lung	lung
25	chr7:103775400-103803400	Weak transcription	Left Ventricle	heart
26	chr7:103775800-103803800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr7:103776800-103803800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr7:103776800-103820200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr7:103776800-103822800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr7:103777000-103799800	Weak transcription	K562	blood
31	chr7:103777000-103803000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr7:103777000-103803800	Weak transcription	Brain Hippocampus Middle	brain
33	chr7:103777000-103804600	Weak transcription	Colonic Mucosa	Colon
34	chr7:103777000-103804800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr7:103777000-103805200	Weak transcription	Placenta	Placenta
36	chr7:103777000-103819600	Weak transcription	Fetal Brain Female	brain
37	chr7:103777200-103805000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr7:103777200-103819400	Weak transcription	GM12878-XiMat	blood
39	chr7:103777400-103801600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr7:103777400-103803400	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr7:103777400-103805000	Weak transcription	HMEC	breast
42	chr7:103777400-103819800	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr7:103777600-103790400	Weak transcription	Fetal Lung	lung
44	chr7:103778200-103793400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr7:103778200-103793600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr7:103778200-103800200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr7:103778200-103802800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr7:103778200-103802800	Weak transcription	Adipose Nuclei	Adipose
49	chr7:103778200-103803600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr7:103778200-103803600	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links