Variant report

Variant	rs4729959
Chromosome Location	chr7:103735755-103735756
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103733662..103736241-chr7:103737952..103739529,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10236401	0.85[GIH][hapmap]
rs10239281	0.92[GIH][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10269939	0.89[YRI][hapmap]
rs10953404	0.81[EUR][1000 genomes]
rs11773168	0.87[EUR][1000 genomes]
rs11978569	0.82[EUR][1000 genomes]
rs11984388	0.82[CEU][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12536622	0.81[ASN][1000 genomes]
rs12537685	0.85[GIH][hapmap];0.83[MEX][hapmap]
rs12705177	0.82[CEU][hapmap];0.92[GIH][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs12705189	0.82[GIH][hapmap]
rs194826	0.84[ASN][1000 genomes]
rs194827	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs194829	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs194836	0.82[CEU][hapmap];0.92[GIH][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap]
rs194839	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs194840	0.82[CEU][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs194842	0.82[CEU][hapmap];0.92[GIH][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs194850	0.82[CEU][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs194852	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs194853	0.82[CEU][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs194854	0.82[CEU][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs194855	0.82[CEU][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs194856	0.87[CEU][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs194862	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs194863	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs194864	0.87[CEU][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs194866	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs2058720	0.83[EUR][1000 genomes]
rs2058721	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2299407	0.82[CEU][hapmap];0.92[GIH][hapmap];0.88[EUR][1000 genomes]
rs2307400	0.87[YRI][hapmap]
rs3808011	0.82[CEU][hapmap];0.87[YRI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3808012	0.81[CEU][hapmap];0.80[JPT][hapmap];0.88[EUR][1000 genomes]
rs3808013	0.82[CEU][hapmap];0.92[GIH][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs3808014	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3808015	0.87[EUR][1000 genomes]
rs3823978	0.85[EUR][1000 genomes]
rs4486111	0.85[GIH][hapmap]
rs4727586	0.81[ASN][1000 genomes]
rs4729956	0.81[ASN][1000 genomes]
rs4729960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55848	0.81[CEU][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6944360	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs6944653	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6946357	0.82[GIH][hapmap]
rs6952639	0.82[CEU][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs6975834	0.85[GIH][hapmap];0.87[MEX][hapmap];0.89[YRI][hapmap]
rs6979022	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs6979695	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs73187435	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs741325	0.89[YRI][hapmap]
rs9641322	0.87[CEU][hapmap];0.92[GIH][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4729959	ATXN7L1	cis	cerebellum	SCAN
rs4729959	ORAI2	cis	parietal	SCAN
rs4729959	TAF6	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103734800-103737200	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links