Variant report

Variant	rs4729960
Chromosome Location	chr7:103737659-103737660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103628846..103630633-chr7:103736485..103738487,2	K562	blood:
2	chr7:103213980..103214536-chr7:103737217..103737782,2	K562	blood:
3	chr7:103213590..103214312-chr7:103736959..103737811,5	MCF-7	breast:
4	chr7:103630552..103631385-chr7:103736876..103737824,2	K562	blood:

Variant related genes	Relation type
ENSG00000189056	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10239281	0.82[CEU][hapmap];0.85[YRI][hapmap];0.84[EUR][1000 genomes]
rs10269939	0.89[YRI][hapmap]
rs11773168	0.86[EUR][1000 genomes]
rs11978569	0.83[EUR][1000 genomes]
rs11984388	0.83[CEU][hapmap];0.90[YRI][hapmap];0.86[EUR][1000 genomes]
rs12536622	0.81[ASN][1000 genomes]
rs12705177	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs194826	0.84[ASN][1000 genomes]
rs194827	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs194829	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs194836	0.82[CEU][hapmap];0.89[YRI][hapmap]
rs194839	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs194840	0.83[CEU][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs194842	0.82[CEU][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs194850	0.83[CEU][hapmap];0.90[YRI][hapmap];0.87[EUR][1000 genomes]
rs194852	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs194853	0.82[CEU][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs194854	0.83[CEU][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs194855	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs194856	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs194862	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs194863	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs194864	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs194866	0.83[CEU][hapmap];0.87[EUR][1000 genomes]
rs2058720	0.82[EUR][1000 genomes]
rs2058721	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2299407	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs2307400	0.88[YRI][hapmap]
rs3808011	0.83[CEU][hapmap];0.88[YRI][hapmap];0.86[EUR][1000 genomes]
rs3808012	0.82[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs3808013	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs3808014	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3808015	0.86[EUR][1000 genomes]
rs3823978	0.84[EUR][1000 genomes]
rs4727586	0.81[ASN][1000 genomes]
rs4729956	0.81[ASN][1000 genomes]
rs4729959	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55848	0.82[CEU][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6944360	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs6944653	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6952639	0.81[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs6975834	0.89[YRI][hapmap]
rs6979022	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs6979695	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs73187435	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs741325	0.89[YRI][hapmap]
rs9641322	0.86[CEU][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103737600-103738800	Weak transcription	K562	blood

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