Variant report

Variant	rs194850
Chromosome Location	chr7:103777887-103777888
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103769811..103772030-chr7:103775156..103777907,2	K562	blood:

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10231179	0.88[CEU][hapmap];0.83[JPT][hapmap]
rs10231189	0.87[CEU][hapmap];0.83[JPT][hapmap]
rs10236259	0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs10236401	0.87[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs10239281	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1024817	0.91[JPT][hapmap]
rs10265732	0.82[EUR][1000 genomes]
rs10265960	0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs10265985	0.88[CEU][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs10269939	0.86[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1035168	0.87[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10953406	0.87[CEU][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs10953407	0.82[EUR][1000 genomes]
rs10953409	0.82[EUR][1000 genomes]
rs10953410	0.82[EUR][1000 genomes]
rs11773168	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11973848	0.81[EUR][1000 genomes]
rs11980573	0.82[EUR][1000 genomes]
rs11982003	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs11984388	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12535884	0.87[CEU][hapmap];0.83[JPT][hapmap]
rs12537665	0.86[CEU][hapmap];0.83[JPT][hapmap]
rs12537685	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs12667514	0.87[CEU][hapmap];0.83[JPT][hapmap]
rs12669853	0.88[CEU][hapmap];0.83[JPT][hapmap]
rs12705177	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12705185	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12705189	0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1557663	0.84[CEU][hapmap];0.83[JPT][hapmap]
rs17324209	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs194826	0.82[ASN][1000 genomes]
rs194827	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs194829	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs194836	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs194839	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs194840	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs194842	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194844	0.86[ASN][1000 genomes]
rs194845	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs194852	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs194853	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194854	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194855	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs194856	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs194860	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs194862	0.95[CEU][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs194863	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs194864	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs194866	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2058720	0.90[CEU][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2058721	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2075217	0.83[EUR][1000 genomes]
rs2075218	0.88[CEU][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes]
rs2075219	0.88[CEU][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs2075220	0.91[CEU][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs2078807	0.87[JPT][hapmap]
rs2188284	0.82[JPT][hapmap]
rs2192965	0.88[CEU][hapmap];0.83[JPT][hapmap]
rs2214009	0.83[JPT][hapmap]
rs2299407	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2307400	0.87[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2307405	0.84[EUR][1000 genomes]
rs28372965	0.81[EUR][1000 genomes]
rs3087358	0.87[CEU][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs3808011	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3808012	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3808013	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3808014	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3808015	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3823978	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4370467	0.81[EUR][1000 genomes]
rs4486111	0.87[CEU][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs4529396	0.80[EUR][1000 genomes]
rs4636136	0.87[CEU][hapmap];0.83[JPT][hapmap]
rs4729959	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4729960	0.83[CEU][hapmap];0.90[YRI][hapmap];0.87[EUR][1000 genomes]
rs4729962	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs4729963	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4729973	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs55848	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62485900	0.86[EUR][1000 genomes]
rs6944360	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6944653	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6946357	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs6948723	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs6948967	0.82[EUR][1000 genomes]
rs6952639	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6975834	0.87[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6979022	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6979695	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs714519	0.91[JPT][hapmap]
rs73187435	0.83[EUR][1000 genomes]
rs7350041	0.88[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs741325	0.88[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs756754	0.83[JPT][hapmap]
rs7778396	0.95[JPT][hapmap]
rs7795570	0.83[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7806228	0.88[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9641322	0.95[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9656092	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs971813	0.88[CEU][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs9791845	0.87[CEU][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs9918581	0.83[JPT][hapmap]
rs9918639	0.83[JPT][hapmap]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103761400-103778600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:103763400-103779400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:103763800-103815000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:103764000-103783200	Weak transcription	NHLF	lung
5	chr7:103764000-103829800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:103764400-103778400	Weak transcription	NHDF-Ad	bronchial
7	chr7:103764400-103820200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr7:103765400-103778000	Weak transcription	Stomach Mucosa	stomach
9	chr7:103765600-103815000	Weak transcription	Brain Angular Gyrus	brain
10	chr7:103765600-103840200	Weak transcription	Small Intestine	intestine
11	chr7:103766000-103778000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:103766200-103779000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:103766200-103779000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:103766200-103800000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:103766200-103803800	Weak transcription	Pancreas	Pancrea
16	chr7:103766200-103816000	Weak transcription	Brain Substantia Nigra	brain
17	chr7:103766200-103823600	Weak transcription	Esophagus	oesophagus
18	chr7:103766200-103838400	Weak transcription	Spleen	Spleen
19	chr7:103766400-103822600	Weak transcription	Colon Smooth Muscle	Colon
20	chr7:103767200-103779000	Weak transcription	Fetal Brain Male	brain
21	chr7:103767200-103829200	Weak transcription	Gastric	stomach
22	chr7:103767200-103843600	Weak transcription	Right Ventricle	heart
23	chr7:103767400-103778400	Weak transcription	Psoas Muscle	Psoas
24	chr7:103767600-103779000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr7:103767600-103820200	Weak transcription	Brain Germinal Matrix	brain
26	chr7:103768000-103779800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr7:103769200-103778800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:103769200-103822600	Weak transcription	Fetal Kidney	kidney
29	chr7:103769400-103778000	Strong transcription	Liver	Liver
30	chr7:103769400-103778200	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr7:103769400-103778400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr7:103769400-103778600	Strong transcription	Primary B cells from peripheral blood	blood
33	chr7:103769400-103778600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr7:103769400-103779800	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr7:103769600-103778200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr7:103770000-103778200	Strong transcription	Adipose Nuclei	Adipose
37	chr7:103770000-103778400	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr7:103770000-103778800	Strong transcription	Primary T cells from cord blood	blood
39	chr7:103770600-103778200	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr7:103770600-103778400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:103770600-103778600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr7:103770800-103778200	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr7:103770800-103778600	Strong transcription	Fetal Muscle Leg	muscle
44	chr7:103770800-103778800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr7:103771200-103778200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr7:103771400-103778400	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr7:103771800-103778400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr7:103771800-103800000	Weak transcription	HSMM	muscle
49	chr7:103771800-103804400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr7:103771800-103807200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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