Variant report

Variant	rs4729962
Chromosome Location	chr7:103778471-103778472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103769885..103772805-chr7:103778154..103780939,3	K562	blood:
2	chr7:103773857..103776451-chr7:103778277..103781105,4	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10239281	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs1024817	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10269939	0.91[JPT][hapmap]
rs1035168	0.95[JPT][hapmap]
rs11773168	0.86[ASN][1000 genomes]
rs11984388	0.84[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs12536622	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12539921	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12670625	1.00[CEU][hapmap]
rs12705177	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs12705189	0.91[JPT][hapmap]
rs17158452	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17158464	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs194836	0.91[JPT][hapmap]
rs194839	0.83[ASN][1000 genomes]
rs194840	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs194842	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs194845	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194850	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs194852	0.86[ASN][1000 genomes]
rs194853	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs194854	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs194860	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2058720	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2058721	0.84[ASN][1000 genomes]
rs2188245	1.00[CEU][hapmap]
rs2299407	0.83[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2307400	0.95[JPT][hapmap]
rs28767289	0.85[AMR][1000 genomes]
rs3808011	0.83[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs3808012	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs3808013	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs3808014	0.84[ASN][1000 genomes]
rs3808015	0.86[ASN][1000 genomes]
rs3823978	0.86[ASN][1000 genomes]
rs4729954	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4729955	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4729956	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4729973	0.95[JPT][hapmap]
rs55848	0.83[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs56022599	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66797006	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67580058	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6944360	0.84[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs6944653	0.86[ASN][1000 genomes]
rs6952639	0.81[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs6975834	0.91[JPT][hapmap]
rs6979022	0.84[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs6979695	0.82[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs714519	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73185501	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73187416	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73189312	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7350041	0.91[JPT][hapmap]
rs741325	0.91[JPT][hapmap]
rs7778396	0.90[JPT][hapmap]
rs7795570	0.91[JPT][hapmap]
rs7806228	0.91[JPT][hapmap]
rs9641322	0.91[JPT][hapmap];0.83[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103761400-103778600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:103763400-103779400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:103763800-103815000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:103764000-103783200	Weak transcription	NHLF	lung
5	chr7:103764000-103829800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:103764400-103820200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr7:103765600-103815000	Weak transcription	Brain Angular Gyrus	brain
8	chr7:103765600-103840200	Weak transcription	Small Intestine	intestine
9	chr7:103766200-103779000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:103766200-103779000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:103766200-103800000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:103766200-103803800	Weak transcription	Pancreas	Pancrea
13	chr7:103766200-103816000	Weak transcription	Brain Substantia Nigra	brain
14	chr7:103766200-103823600	Weak transcription	Esophagus	oesophagus
15	chr7:103766200-103838400	Weak transcription	Spleen	Spleen
16	chr7:103766400-103822600	Weak transcription	Colon Smooth Muscle	Colon
17	chr7:103767200-103779000	Weak transcription	Fetal Brain Male	brain
18	chr7:103767200-103829200	Weak transcription	Gastric	stomach
19	chr7:103767200-103843600	Weak transcription	Right Ventricle	heart
20	chr7:103767600-103779000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:103767600-103820200	Weak transcription	Brain Germinal Matrix	brain
22	chr7:103768000-103779800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr7:103769200-103778800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:103769200-103822600	Weak transcription	Fetal Kidney	kidney
25	chr7:103769400-103778600	Strong transcription	Primary B cells from peripheral blood	blood
26	chr7:103769400-103778600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr7:103769400-103779800	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr7:103770000-103778800	Strong transcription	Primary T cells from cord blood	blood
29	chr7:103770600-103778600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr7:103770800-103778600	Strong transcription	Fetal Muscle Leg	muscle
31	chr7:103770800-103778800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr7:103771800-103800000	Weak transcription	HSMM	muscle
33	chr7:103771800-103804400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr7:103771800-103807200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr7:103771800-103820000	Weak transcription	NHEK	skin
36	chr7:103772200-103792000	Weak transcription	Aorta	Aorta
37	chr7:103773200-103822800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr7:103773400-103782600	Weak transcription	HUVEC	blood vessel
39	chr7:103773600-103778600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr7:103773600-103781000	Weak transcription	HSMMtube	muscle
41	chr7:103773800-103778800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr7:103774000-103778600	Strong transcription	Fetal Thymus	thymus
43	chr7:103774600-103781000	Weak transcription	HepG2	liver
44	chr7:103774600-103803600	Weak transcription	Ovary	ovary
45	chr7:103774800-103802800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr7:103775200-103829200	Weak transcription	Lung	lung
47	chr7:103775400-103803400	Weak transcription	Left Ventricle	heart
48	chr7:103775800-103803800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr7:103776400-103778600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr7:103776600-103779000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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