Variant report

Variant	rs17158464
Chromosome Location	chr7:103690444-103690445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1024817	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10252269	0.80[ASN][1000 genomes]
rs10256829	0.80[ASN][1000 genomes]
rs10256884	0.97[ASN][1000 genomes]
rs10261266	0.97[ASN][1000 genomes]
rs10281061	0.80[ASN][1000 genomes]
rs10282214	0.80[ASN][1000 genomes]
rs10480652	0.97[ASN][1000 genomes]
rs10953402	0.98[ASN][1000 genomes]
rs11971200	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12536622	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12539921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12670625	1.00[CEU][hapmap]
rs17158452	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1858812	0.95[ASN][1000 genomes]
rs194845	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs194860	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2157800	0.80[ASN][1000 genomes]
rs2188245	1.00[CEU][hapmap]
rs4727586	0.91[ASN][1000 genomes]
rs4729948	0.97[ASN][1000 genomes]
rs4729950	0.97[ASN][1000 genomes]
rs4729951	0.97[ASN][1000 genomes]
rs4729952	0.97[ASN][1000 genomes]
rs4729953	0.97[ASN][1000 genomes]
rs4729954	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4729955	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4729956	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4729960	0.91[JPT][hapmap]
rs4729962	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55914768	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56022599	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56325675	0.98[ASN][1000 genomes]
rs59700255	0.86[EUR][1000 genomes]
rs60297107	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs66797006	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67580058	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6955592	0.82[ASN][1000 genomes]
rs714519	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs73185501	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73187416	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73189312	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs756744	0.97[ASN][1000 genomes]
rs7797741	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888924	chr7:103637906-103706936	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1018253	chr7:103669491-103731850	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103690200-103692800	Weak transcription	HepG2	liver
2	chr7:103690400-103690800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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