Variant report

Variant	rs55914768
Chromosome Location	chr7:103690167-103690168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10240155	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10240408	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10240682	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10252269	0.98[ASN][1000 genomes]
rs10255340	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10256829	0.98[ASN][1000 genomes]
rs10281061	0.98[ASN][1000 genomes]
rs10282214	0.98[ASN][1000 genomes]
rs10953402	0.80[ASN][1000 genomes]
rs11971200	0.80[ASN][1000 genomes]
rs12536622	0.81[AMR][1000 genomes]
rs12539921	0.84[AMR][1000 genomes]
rs17158464	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1858811	0.96[ASN][1000 genomes]
rs194845	0.80[AMR][1000 genomes]
rs194860	0.80[AMR][1000 genomes]
rs2157800	0.98[ASN][1000 genomes]
rs2384982	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34714175	0.93[ASN][1000 genomes]
rs4729945	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4729946	0.96[ASN][1000 genomes]
rs4729947	0.96[ASN][1000 genomes]
rs4729954	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4729956	0.81[AMR][1000 genomes]
rs56325675	0.80[ASN][1000 genomes]
rs58765880	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60297107	0.80[ASN][1000 genomes]
rs66918163	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6955592	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73187416	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs756742	0.97[ASN][1000 genomes]
rs7797592	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7797632	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7797741	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7797777	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888924	chr7:103637906-103706936	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1018253	chr7:103669491-103731850	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103688600-103690200	Enhancers	HepG2	liver
2	chr7:103690000-103690400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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