Variant report

Variant	rs1858811
Chromosome Location	chr7:103679621-103679622
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103678553..103681396-chr7:103683210..103685831,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10240155	0.93[ASN][1000 genomes]
rs10240408	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10240682	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10252269	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10255340	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10256829	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10256884	0.83[AMR][1000 genomes]
rs10261266	0.83[AMR][1000 genomes]
rs10281061	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10282214	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10953402	0.80[ASN][1000 genomes]
rs11971200	0.80[ASN][1000 genomes]
rs1858812	0.82[ASN][1000 genomes]
rs2157800	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2384982	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34714175	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4729945	1.00[ASN][1000 genomes]
rs4729946	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4729947	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4729948	0.83[AMR][1000 genomes]
rs55914768	0.96[ASN][1000 genomes]
rs56325675	0.80[ASN][1000 genomes]
rs58765880	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60297107	0.80[ASN][1000 genomes]
rs66918163	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6955592	0.96[ASN][1000 genomes]
rs73185501	0.82[ASN][1000 genomes]
rs756742	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs756744	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7797592	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7797632	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7797741	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7797777	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888924	chr7:103637906-103706936	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1018253	chr7:103669491-103731850	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103679200-103680000	Enhancers	K562	blood
2	chr7:103679600-103688600	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links