Variant report

Variant	rs194837
Chromosome Location	chr7:103766003-103766004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103764338..103766327-chr7:103771229..103772768,2	K562	blood:
2	chr7:103764441..103766875-chr7:103846912..103849678,2	K562	blood:
3	chr7:103764338..103766709-chr7:103771268..103773724,2	K562	blood:

Variant related genes	Relation type
ENSG00000164815	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10225526	0.81[ASN][1000 genomes]
rs10276148	0.85[ASN][1000 genomes]
rs1035169	0.93[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10808128	0.89[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10953408	0.89[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs113877	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12056186	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12056191	0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12705180	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12705181	0.87[ASN][1000 genomes]
rs12705187	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12705188	0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs12705190	0.89[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12705191	0.91[GIH][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs12705192	0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs12705193	0.84[EUR][1000 genomes]
rs12705195	0.83[ASN][1000 genomes]
rs13230700	0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs13238183	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs193888	0.93[CHD][hapmap];0.94[JPT][hapmap]
rs194838	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194841	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs194844	0.82[ASW][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs194846	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194847	0.82[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194849	0.82[CEU][hapmap];0.84[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs194851	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194855	0.88[ASW][hapmap];0.98[LWK][hapmap];0.87[MKK][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes]
rs194856	0.88[ASW][hapmap];0.98[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs194857	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194858	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194859	0.82[CEU][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194861	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs194862	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs194863	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs194864	0.94[ASW][hapmap];0.95[LWK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs194865	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs194866	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs194867	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194868	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2160397	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2245659	0.93[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2283035	0.84[EUR][1000 genomes]
rs2299408	1.00[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2299409	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2299411	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2385140	0.93[CHD][hapmap];0.94[JPT][hapmap]
rs34096272	0.85[EUR][1000 genomes]
rs35034355	0.83[ASN][1000 genomes]
rs3757734	0.85[ASN][1000 genomes]
rs3779518	0.89[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3808008	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3808009	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3808010	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3823979	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4265123	0.94[JPT][hapmap]
rs4265124	0.93[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.87[TSI][hapmap]
rs4385393	0.81[ASN][1000 genomes]
rs62485910	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6465959	0.81[ASN][1000 genomes]
rs6948583	0.89[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6961262	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs765408	0.94[JPT][hapmap]
rs7780591	0.81[ASN][1000 genomes]
rs9768749	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs194837	ZNHIT1	cis	cerebellum	SCAN

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103759200-103767000	Weak transcription	Psoas Muscle	Psoas
2	chr7:103761400-103771000	Weak transcription	Fetal Lung	lung
3	chr7:103761400-103778600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:103761600-103769600	Weak transcription	HSMM	muscle
5	chr7:103761800-103766800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:103762000-103766800	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:103762800-103774200	Weak transcription	HepG2	liver
8	chr7:103763000-103777600	Weak transcription	Fetal Intestine Small	intestine
9	chr7:103763200-103769600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:103763400-103773000	Weak transcription	Fetal Heart	heart
11	chr7:103763400-103774200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr7:103763400-103779400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:103763600-103766600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr7:103763600-103766800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:103763600-103766800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr7:103763600-103770800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr7:103763600-103776200	Weak transcription	Colonic Mucosa	Colon
18	chr7:103763800-103766400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr7:103763800-103769800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr7:103763800-103815000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:103764000-103767400	Strong transcription	Primary T cells from cord blood	blood
22	chr7:103764000-103769400	Weak transcription	A549	lung
23	chr7:103764000-103769600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr7:103764000-103783200	Weak transcription	NHLF	lung
25	chr7:103764000-103829800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr7:103764200-103767000	Strong transcription	Adipose Nuclei	Adipose
27	chr7:103764200-103769400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr7:103764200-103769600	Weak transcription	Placenta	Placenta
29	chr7:103764400-103767000	Strong transcription	Stomach Smooth Muscle	stomach
30	chr7:103764400-103772400	Weak transcription	Fetal Intestine Large	intestine
31	chr7:103764400-103776200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr7:103764400-103776400	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr7:103764400-103776400	Weak transcription	NH-A	brain
34	chr7:103764400-103777800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr7:103764400-103778400	Weak transcription	NHDF-Ad	bronchial
36	chr7:103764400-103820200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr7:103764600-103767000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr7:103764600-103771200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr7:103764600-103771200	Weak transcription	HUVEC	blood vessel
40	chr7:103764600-103772800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr7:103764800-103767400	Strong transcription	Liver	Liver
42	chr7:103764800-103768800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr7:103765000-103766200	Strong transcription	Brain Substantia Nigra	brain
44	chr7:103765000-103766200	Strong transcription	Lung	lung
45	chr7:103765000-103766400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr7:103765000-103767000	Strong transcription	Fetal Stomach	stomach
47	chr7:103765000-103767200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr7:103765000-103767200	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr7:103765000-103767200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr7:103765000-103767200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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