Variant report
| Variant | rs6465959 |
|---|---|
| Chromosome Location | chr7:103706726-103706727 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:103705230..103707654-chr7:103709368..103711788,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10225526 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10246098 | 0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10254126 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10276148 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs113877 | 0.81[ASN][1000 genomes] |
| rs12705173 | 0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12705180 | 0.81[ASN][1000 genomes] |
| rs13233398 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs194837 | 0.81[ASN][1000 genomes] |
| rs194838 | 0.81[ASN][1000 genomes] |
| rs194851 | 0.81[ASN][1000 genomes] |
| rs194857 | 0.81[ASN][1000 genomes] |
| rs194858 | 0.81[ASN][1000 genomes] |
| rs194859 | 0.81[ASN][1000 genomes] |
| rs194865 | 0.81[ASN][1000 genomes] |
| rs194868 | 0.81[ASN][1000 genomes] |
| rs2299408 | 0.81[ASN][1000 genomes] |
| rs3808010 | 0.81[ASN][1000 genomes] |
| rs3823979 | 0.81[ASN][1000 genomes] |
| rs4385393 | 0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6978755 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7780591 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7797463 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv888924 | chr7:103637906-103706936 | Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1018253 | chr7:103669491-103731850 | Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:103706400-103708600 | Enhancers | HepG2 | liver |
